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NC_026590.1__YP_009124901.1__VC46_gp074__00158

Bact-Vir

NC_026590.1__YP_009124901.1__VC46_gp074__00158

Identity

Accession:
NC_026590 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gaiavirus› Mycobacterium_phage_Gaia

TaxID: 1486472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-50
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 58.0 4.73e-01 80.9% 87.2%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.58 47.0 3.41e-01 93.6% 80.3%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 37.0 3.44e-01 74.5% 57.6%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.54 38.0 2.34e-01 76.6% 13.0%
4zd6C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 39.0 2.59e-01 83.0% 66.1%
4q65A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 35.0 2.08e-01 74.5% 37.8%
3u7rA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.50 36.0 2.54e-01 78.7% 93.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941565 377.1.1.135 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7685 0.84 56.0 6.03e-01 70.2% 90.0%
5010496 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.81 54.0 5.50e-01 70.2% 71.1%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.60 48.0 3.50e-01 93.6% 80.3%
3557789 377.9.1.21 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › PHD 0.59 40.0 3.99e-01 72.3% 68.0%
4437687 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.55 36.0 2.40e-01 72.3% 14.5%
3761103 2003.1.2.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.54 36.0 2.48e-01 76.6% 16.5%
3489858 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.53 36.0 3.56e-01 70.2% 70.0%