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NC_026604.1__YP_009125872.1__VC45_gp019__00019

Bact-Vir

NC_026604.1__YP_009125872.1__VC45_gp019__00019

Identity

Accession:
NC_026604 ↗
Kingdom:
phage

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Cerasum

TaxID: 1527463

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 190-333
PDB
Domain cluster: rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00157__D2-120
D2 medium residues 25-156
PDB
D3 medium residues 450-500
PDB
D4 medium residues 501-533_662-738
PDB
Domain cluster: representative
D5 medium residues 585-661
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.69e-01 100.0% 58.6%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 51.0 4.29e-01 100.0% 49.6%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 53.0 4.41e-01 100.0% 52.1%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 56.0 4.36e-01 100.0% 51.2%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 41.0 4.11e-01 85.7% 65.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 33.0 4.13e-01 81.8% 88.6%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 4.54e-01 100.0% 59.3%
2kutA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.42e-01 93.5% 65.1%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 4.21e-01 100.0% 69.3%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.29e-01 94.8% 76.8%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.24e-01 94.8% 72.5%
1imhC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.60e-01 76.6% 54.7%
2x9zA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.91e-01 98.7% 79.2%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.21e-01 100.0% 87.4%
2l8aA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.54 46.0 3.83e-01 100.0% 52.3%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.85e-01 98.7% 68.8%
1x5xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.73e-01 100.0% 59.6%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 44.0 3.88e-01 97.4% 64.5%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 37.0 2.73e-01 74.0% 86.9%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.84e-01 98.7% 68.0%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 2.98e-01 100.0% 23.2%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 33.0 2.61e-01 90.9% 28.3%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 31.0 3.38e-01 70.1% 78.9%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.39e-01 80.5% 63.4%
2d42A01 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.51 42.0 3.37e-01 100.0% 64.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1137419 10.2.1.57 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bbp16 0.64 56.0 4.69e-01 100.0% 58.6%
1313975 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.63 53.0 4.41e-01 100.0% 52.1%
5032716 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.04e-01 97.4% 65.6%
3026406 10.2.1.57 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bbp16 0.60 52.0 4.47e-01 100.0% 63.6%
4969174 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.43e-01 98.7% 93.1%
3906505 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.58 49.0 4.09e-01 98.7% 86.7%
3228471 11.1.1.889 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 0.58 38.0 3.71e-01 87.0% 61.2%
4949004 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 49.0 3.99e-01 100.0% 49.7%
4511768 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.56 39.0 2.58e-01 71.4% 92.9%
3571186 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 40.0 4.22e-01 100.0% 92.3%
3562185 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.55 47.0 3.77e-01 98.7% 62.0%
3258283 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.54 42.0 4.02e-01 85.7% 92.2%
3887984 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.91e-01 100.0% 72.9%
3571554 12.5.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.53 45.0 3.73e-01 100.0% 50.3%
3257661 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.53 45.0 4.01e-01 98.7% 71.3%
3486555 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 43.0 3.87e-01 93.5% 66.4%
3776866 12.5.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FAM171A1-2-B_N 0.52 40.0 3.68e-01 88.3% 65.5%
3830168 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.61e-01 100.0% 57.3%
3931958 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.51 33.0 3.52e-01 92.2% 78.1%
4002360 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 41.0 3.02e-01 94.8% 84.6%