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NC_026609.1__YP_009126470.1__VC66_gp28__00028

Bact-Vir

NC_026609.1__YP_009126470.1__VC66_gp28__00028

Identity

Accession:
NC_026609 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lidleunavirus› Lactobacillus_phage_Ldl1

TaxID: 1552735

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-155
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.61 38.0 4.14e-01 98.7% 75.2%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 30.0 3.15e-01 100.0% 50.7%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.55 31.0 3.55e-01 98.1% 73.6%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.91e-01 100.0% 72.5%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 30.0 3.31e-01 97.4% 67.2%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 30.0 3.34e-01 74.2% 69.0%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 32.0 3.44e-01 77.4% 72.4%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 25.0 2.98e-01 96.8% 65.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073891 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 32.0 3.80e-01 100.0% 72.0%
5796 504.1.1.2 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › DUF1149 0.61 37.0 4.12e-01 97.4% 75.8%
3175912 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.59 33.0 3.06e-01 100.0% 41.0%
3634501 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.59 33.0 3.05e-01 100.0% 41.0%
4827722 9.13.1.5 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.58 29.0 3.66e-01 100.0% 80.7%
3526482 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.58 28.0 3.26e-01 98.1% 63.8%
4958682 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.57 41.0 4.49e-01 79.4% 88.5%
3660463 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 33.0 3.24e-01 100.0% 49.7%
3727865 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.55 35.0 3.14e-01 100.0% 45.6%
4942348 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 38.0 4.20e-01 80.6% 88.8%
3330582 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 38.0 4.21e-01 72.3% 100.0%
3255874 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 33.0 3.06e-01 100.0% 48.7%
4939185 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 4.38e-01 88.4% 100.0%
3962890 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 33.0 3.64e-01 85.2% 77.6%
3440861 222.1.1.37 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE, Acyl-ACP_TE_C 0.51 36.0 3.27e-01 72.3% 86.2%