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NC_026610.2__YP_009126544.1__VC55_gp68__00068

Bact-Vir

NC_026610.2__YP_009126544.1__VC55_gp68__00068

Identity

Accession:
NC_026610 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VpKK5

TaxID: 1538804

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-95
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 58.0 5.38e-01 100.0% 56.5%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 58.0 6.76e-01 97.8% 98.4%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 59.0 6.76e-01 98.9% 97.0%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 58.0 4.84e-01 100.0% 45.1%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 59.0 5.98e-01 100.0% 75.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 57.0 4.70e-01 98.9% 42.7%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 56.0 6.47e-01 97.8% 98.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 53.0 6.26e-01 97.8% 98.4%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 5.35e-01 100.0% 65.3%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.92e-01 98.9% 79.3%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 6.00e-01 96.6% 95.5%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 5.58e-01 96.6% 71.9%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 6.16e-01 98.9% 83.5%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.63e-01 97.8% 83.3%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 54.0 5.36e-01 98.9% 78.9%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.79e-01 100.0% 64.2%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 5.02e-01 100.0% 77.6%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.88e-01 100.0% 77.6%
1v3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 55.0 4.94e-01 100.0% 81.7%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.58 53.0 4.66e-01 100.0% 79.7%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 44.0 4.19e-01 95.5% 71.2%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 35.0 4.04e-01 96.6% 91.9%
1qasA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 37.0 3.74e-01 91.0% 68.2%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.54 32.0 3.74e-01 95.5% 94.4%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 43.0 3.79e-01 89.9% 73.0%
2i9cA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.52 45.0 4.19e-01 95.5% 85.6%
3l9tA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.51 40.0 3.72e-01 92.1% 66.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2602 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.83 59.0 5.21e-01 98.9% 53.3%
4984847 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.81 57.0 6.58e-01 96.6% 100.0%
3388122 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 59.0 5.76e-01 98.9% 72.6%
3426143 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.77 62.0 5.68e-01 100.0% 66.1%
5033207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 5.19e-01 97.8% 56.8%
4944548 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.77 60.0 4.40e-01 98.9% 33.3%
3919567 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.76 62.0 6.06e-01 97.8% 80.0%
4978090 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 60.0 4.43e-01 100.0% 34.9%
3933409 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.78e-01 100.0% 85.0%
3598642 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 5.26e-01 100.0% 57.9%
4625648 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 57.0 5.26e-01 96.6% 65.1%
3661546 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 59.0 5.25e-01 98.9% 60.8%
3439866 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.73 59.0 4.99e-01 100.0% 53.1%
5045098 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 63.0 6.29e-01 100.0% 90.0%
3163573 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.73 62.0 5.68e-01 100.0% 71.3%
3868765 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.72 62.0 6.09e-01 100.0% 85.3%
4627913 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.72 59.0 5.77e-01 98.9% 81.1%
3836863 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.71 60.0 5.03e-01 98.9% 54.7%
3457837 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 63.0 5.81e-01 98.9% 85.2%
5028855 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.50e-01 98.9% 83.5%
3824526 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.10e-01 100.0% 60.0%
5003349 101.1.2.921 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7109 0.69 55.0 5.33e-01 95.5% 75.0%
3434805 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 61.0 5.77e-01 100.0% 82.9%
3386834 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 61.0 5.49e-01 100.0% 72.5%
3685188 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.67 62.0 4.87e-01 100.0% 55.3%
3615162 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 3.79e-01 100.0% 21.4%
3347816 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.66 58.0 5.27e-01 100.0% 73.0%
3173540 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.65 44.0 4.50e-01 79.8% 72.9%
5018748 101.1.2.100 ↗ alpha arrays › HTH › HTH › winged helix domain › FeoC 0.65 59.0 5.70e-01 97.8% 90.0%
3479163 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 59.0 5.13e-01 98.9% 67.7%
3924465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 58.0 5.26e-01 100.0% 73.3%
4022896 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 59.0 4.61e-01 100.0% 52.2%
3932420 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.63 57.0 5.38e-01 100.0% 92.4%
3820871 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 57.0 4.99e-01 100.0% 77.7%
3685767 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.54e-01 100.0% 73.0%
3422892 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.61 55.0 4.07e-01 100.0% 42.7%
3547256 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.61 54.0 4.89e-01 98.9% 83.3%
3214664 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 55.0 5.15e-01 100.0% 96.4%
4991965 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 57.0 5.23e-01 100.0% 85.5%
2652 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.60 55.0 4.94e-01 100.0% 81.7%
3958837 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.68e-01 100.0% 71.8%
3612606 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.58 35.0 3.32e-01 93.3% 48.2%
3494483 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.88e-01 82.0% 60.0%
4034102 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.57 47.0 3.01e-01 93.3% 42.2%
3956068 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 2.85e-01 95.5% 25.8%
5082257 3281.1.1.0 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related 0.52 43.0 2.76e-01 94.4% 68.7%
3781755 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.29e-01 92.1% 50.2%
3722863 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 40.0 2.81e-01 87.6% 55.2%