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NC_027125.1__YP_009140547.1__ABG42_gp46__00046
Bact-VirNC_027125.1__YP_009140547.1__ABG42_gp46__00046
Identity
- Accession:
- NC_027125 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Taxonomy
TaxID: 908819
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-121
Domain cluster:
rep: MZ326860.1__QYW02172.1__CPT_Sonora_071__00069__D16-113
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 46.0 | 3.31e-01 | 84.4% | 93.5% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.57 | 43.0 | 3.79e-01 | 77.1% | 66.2% |
| 1kz7A01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.57 | 44.0 | 3.66e-01 | 82.6% | 96.9% |
| 1lkxA01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.56 | 42.0 | 3.30e-01 | 80.7% | 63.5% |
| 1lm3B00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.56 | 39.0 | 3.97e-01 | 71.6% | 79.2% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 40.0 | 4.12e-01 | 74.3% | 90.0% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 42.0 | 4.55e-01 | 91.7% | 96.7% |
| 4nn5A00 | 1.20.1250.90 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Thymic stromal lymphopoietin | 0.53 | 35.0 | 3.60e-01 | 85.3% | 68.8% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 33.0 | 3.86e-01 | 88.1% | 92.0% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.52 | 42.0 | 4.10e-01 | 89.0% | 77.3% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 39.0 | 4.10e-01 | 87.2% | 89.0% |
| 1xd4A03 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.52 | 42.0 | 3.38e-01 | 89.9% | 58.8% |
| 6tejB01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.52 | 40.0 | 2.89e-01 | 81.7% | 54.9% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 43.0 | 3.94e-01 | 89.9% | 69.6% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.51 | 38.0 | 3.51e-01 | 78.0% | 92.9% |
| 2g47A03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 41.0 | 3.30e-01 | 88.1% | 79.3% |
| 6gpxB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 46.0 | 3.48e-01 | 100.0% | 53.2% |
| 3amiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 40.0 | 3.35e-01 | 86.2% | 92.0% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 44.0 | 4.01e-01 | 100.0% | 72.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942915 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.60 | 49.0 | 3.46e-01 | 87.2% | 82.9% |
| 3733736 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.59 | 49.0 | 3.22e-01 | 92.7% | 20.0% |
| 3917650 | 3965.1.1.1 ↗ | alpha arrays › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › ORC3_ins | 0.58 | 49.0 | 3.98e-01 | 90.8% | 50.7% |
| 3592579 | 3619.1.1.0 ↗ | alpha arrays › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain | 0.56 | 42.0 | 3.25e-01 | 80.7% | 40.8% |
| 2157267 | 109.4.1.204 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ | 0.56 | 38.0 | 3.75e-01 | 87.2% | 65.5% |
| 4048399 | 5050.1.1.22 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like | 0.56 | 52.0 | 4.14e-01 | 100.0% | 88.3% |
| 5053234 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 43.0 | 4.62e-01 | 87.2% | 98.9% |
| 3782465 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.55 | 46.0 | 2.97e-01 | 95.4% | 21.5% |
| 4954524 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.55 | 46.0 | 3.64e-01 | 88.1% | 79.5% |
| 4033064 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 49.0 | 4.00e-01 | 100.0% | 89.5% |
| 3589541 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.54 | 45.0 | 3.66e-01 | 88.1% | 75.3% |
| 4983528 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 50.0 | 4.00e-01 | 100.0% | 91.0% |
| 3277409 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 36.0 | 2.97e-01 | 81.7% | 38.5% |
| 3331108 | 109.1.1.36 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N | 0.53 | 35.0 | 2.77e-01 | 99.1% | 34.0% |
| 5019665 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 48.0 | 3.84e-01 | 100.0% | 86.2% |
| 3773973 | 109.4.1.2522 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, PF31007 | 0.52 | 46.0 | 2.73e-01 | 95.4% | 21.3% |
| 3816099 | 5054.1.1.17 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 | 0.51 | 45.0 | 3.30e-01 | 95.4% | 91.7% |
| 4979107 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.51 | 45.0 | 3.48e-01 | 94.5% | 66.0% |
| 5023376 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.51 | 37.0 | 3.23e-01 | 78.9% | 65.9% |
| 4057743 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 44.0 | 3.61e-01 | 92.7% | 91.6% |
| 3532935 | 109.4.1.1965 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28295 | 0.51 | 42.0 | 2.99e-01 | 91.7% | 54.6% |
| 4965007 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 46.0 | 3.71e-01 | 100.0% | 90.7% |