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NC_027125.1__YP_009140552.1__ABG42_gp52__00052

Bact-Vir

NC_027125.1__YP_009140552.1__ABG42_gp52__00052

Identity

Accession:
NC_027125 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-119
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 53.0 6.29e-01 76.1% 92.5%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 47.0 5.35e-01 71.7% 77.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 51.0 5.28e-01 74.3% 70.5%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 47.0 5.70e-01 79.6% 94.5%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 44.0 5.48e-01 72.6% 92.9%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 49.0 5.41e-01 76.1% 81.1%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 48.0 4.70e-01 72.6% 60.0%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 49.0 5.83e-01 77.9% 98.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 48.0 5.36e-01 71.7% 82.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 47.0 5.12e-01 76.1% 77.2%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 48.0 5.19e-01 71.7% 77.1%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.16e-01 77.0% 73.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 47.0 5.79e-01 71.7% 100.0%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.24e-01 77.0% 75.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.22e-01 78.8% 76.7%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 5.02e-01 73.5% 73.8%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.80e-01 84.1% 96.7%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.94e-01 76.1% 70.4%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.71e-01 72.6% 65.8%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 46.0 5.38e-01 83.2% 100.0%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 5.10e-01 70.8% 86.7%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 44.0 4.69e-01 73.5% 75.5%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 5.37e-01 77.0% 100.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 4.64e-01 73.5% 73.8%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.67 44.0 5.02e-01 72.6% 92.6%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.86e-01 73.5% 78.3%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.46e-01 77.9% 86.0%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 4.77e-01 70.8% 100.0%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 41.0 4.54e-01 76.1% 85.4%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.81e-01 82.3% 100.0%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.61 45.0 4.68e-01 78.8% 84.6%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.28e-01 81.4% 66.7%
1v3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.19e-01 72.6% 85.8%
2vzyC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 39.0 3.26e-01 76.1% 39.7%
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 36.0 2.99e-01 73.5% 33.7%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 39.0 4.30e-01 76.1% 83.9%
3mxtA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.57 37.0 3.88e-01 85.0% 74.0%
1yreC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 38.0 3.28e-01 77.9% 42.9%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 36.0 3.27e-01 79.6% 46.5%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 3.09e-01 74.3% 53.8%
3up9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 32.0 3.07e-01 75.2% 50.7%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 35.0 3.15e-01 70.8% 98.8%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955611 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.82 53.0 5.54e-01 76.1% 71.2%
5017399 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 54.0 4.84e-01 77.9% 50.7%
5030252 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 49.0 5.25e-01 72.6% 69.0%
3935353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 53.0 6.17e-01 77.9% 91.6%
5049282 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 47.0 5.43e-01 78.8% 78.8%
4964386 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 49.0 5.28e-01 70.8% 72.6%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 51.0 6.07e-01 72.6% 98.7%
3650642 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.78 49.0 5.66e-01 74.3% 85.9%
5000704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 52.0 5.76e-01 78.8% 86.7%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 49.0 5.06e-01 73.5% 68.6%
4971686 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 51.0 5.27e-01 73.5% 72.4%
4022486 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.77 56.0 6.25e-01 84.1% 95.6%
3167236 148.1.3.31 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.76 54.0 6.10e-01 80.5% 96.5%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 50.0 5.30e-01 73.5% 75.0%
5028122 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 48.0 4.56e-01 74.3% 54.6%
5031662 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 50.0 4.84e-01 73.5% 60.0%
3788865 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.76 50.0 5.78e-01 77.9% 93.8%
5031473 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 49.0 5.14e-01 73.5% 71.4%
4978424 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 54.0 5.32e-01 80.5% 69.2%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.75 53.0 6.03e-01 83.2% 97.6%
5031078 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 48.0 5.13e-01 76.1% 74.0%
2685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 47.0 5.19e-01 76.1% 79.8%
4995581 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 49.0 5.24e-01 73.5% 76.0%
4934296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 51.0 5.30e-01 74.3% 75.2%
5031076 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 48.0 4.85e-01 76.1% 64.3%
169108 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 50.0 5.16e-01 77.0% 73.3%
4934021 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 5.20e-01 83.2% 69.2%
4968340 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 5.47e-01 79.6% 85.6%
4978855 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 50.0 4.90e-01 72.6% 64.2%
5000735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 48.0 4.13e-01 72.6% 42.9%
5035522 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 50.0 5.18e-01 75.2% 74.3%
4009179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 48.0 5.39e-01 76.1% 83.3%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.74 58.0 4.54e-01 87.6% 41.3%
4999546 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 51.0 5.51e-01 82.3% 84.2%
3655782 101.1.2.598 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.73 49.0 3.48e-01 72.6% 24.6%
5077121 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 50.0 5.42e-01 74.3% 83.2%
3938245 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.73 48.0 3.81e-01 71.7% 34.6%
5072114 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 51.0 4.64e-01 78.8% 54.0%
3593172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 49.0 5.58e-01 85.0% 91.8%
4971999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 5.14e-01 75.2% 71.2%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 49.0 5.47e-01 72.6% 86.7%
5022936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 47.0 4.85e-01 71.7% 68.2%
4944051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 49.0 4.22e-01 75.2% 45.3%
5056734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 45.0 4.50e-01 70.8% 60.9%
5048525 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 49.0 5.58e-01 79.6% 92.9%
4997662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 46.0 4.74e-01 72.6% 66.4%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.09e-01 75.2% 71.2%
3285760 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 48.0 4.11e-01 72.6% 43.3%
3613393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 5.53e-01 85.8% 97.5%
2724 101.1.2.138 alpha arrays › HTH › HTH › winged helix domain › DUF3860 0.71 53.0 5.80e-01 84.1% 96.7%
4968278 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.71 48.0 5.42e-01 72.6% 91.8%
5013924 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.71 49.0 5.46e-01 77.0% 90.0%
3493458 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.70 45.0 4.12e-01 72.6% 49.3%
4971711 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 4.95e-01 75.2% 72.0%
5050129 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 49.0 4.98e-01 71.7% 79.1%
5077022 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 51.0 5.39e-01 77.9% 85.0%
5075771 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 48.0 4.89e-01 75.2% 73.6%
4969210 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.69 48.0 5.19e-01 79.6% 85.3%
5014345 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.68 48.0 5.31e-01 79.6% 91.1%
5030817 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.68 46.0 4.44e-01 77.0% 60.0%
4997123 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 53.0 4.32e-01 81.4% 73.5%
3237013 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.68 49.0 4.69e-01 74.3% 66.9%
4943782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.63e-01 74.3% 66.7%
5058376 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 5.10e-01 80.5% 85.3%
3316881 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.14e-01 72.6% 50.0%
4968526 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 46.0 5.06e-01 70.8% 86.7%
3827266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.38e-01 73.5% 57.9%
5053142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.51e-01 80.5% 65.8%
4954698 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 46.0 5.00e-01 83.2% 85.3%
3692895 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.66 49.0 3.81e-01 76.1% 78.7%
5082509 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 47.0 4.51e-01 74.3% 93.8%
3743779 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 47.0 4.26e-01 75.2% 85.2%
4967950 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 5.12e-01 83.2% 93.3%
3640260 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 48.0 3.88e-01 75.2% 87.8%
5044477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 5.44e-01 84.1% 100.0%
3469845 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.65 51.0 4.37e-01 84.1% 57.8%
3437845 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 4.93e-01 72.6% 89.5%
4979487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.36e-01 79.6% 61.4%
4992072 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.97e-01 70.8% 100.0%
3901071 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.63 53.0 4.21e-01 92.0% 51.7%
3443785 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.62 48.0 5.10e-01 82.3% 93.0%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.62 46.0 3.76e-01 76.1% 83.6%
4117256 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 43.0 4.12e-01 72.6% 66.2%
3173396 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.69e-01 79.6% 97.3%
3414623 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.58 49.0 3.63e-01 92.0% 91.9%
5066201 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.58 46.0 4.88e-01 86.7% 97.0%
3637726 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 4.00e-01 82.3% 99.1%