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NC_027292.1__YP_009145623.1__NL61_26__00026
Bact-VirNC_027292.1__YP_009145623.1__NL61_26__00026
Identity
- Accession:
- NC_027292 ↗
- Kingdom:
- phage
Quality
71.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Pifdecavirus›
Pseudomonas_phage_Pf-10
TaxID: 1562076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ci8A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.71 | 57.0 | 3.63e-01 | 100.0% | 17.7% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.69 | 51.0 | 3.26e-01 | 100.0% | 15.8% |
| 6yleA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 57.0 | 3.53e-01 | 100.0% | 15.8% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.66 | 58.0 | 3.68e-01 | 100.0% | 20.7% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 57.0 | 3.59e-01 | 100.0% | 18.5% |
| 5k19A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 57.0 | 3.52e-01 | 100.0% | 17.0% |
| 1yr2A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.65 | 58.0 | 3.65e-01 | 100.0% | 20.8% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 54.0 | 3.49e-01 | 100.0% | 19.4% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 54.0 | 3.47e-01 | 100.0% | 22.2% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 52.0 | 3.16e-01 | 100.0% | 20.9% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.60 | 51.0 | 3.67e-01 | 100.0% | 31.0% |
| 5wbyC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 3.29e-01 | 100.0% | 20.1% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 52.0 | 3.36e-01 | 100.0% | 20.4% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 51.0 | 3.33e-01 | 100.0% | 19.8% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 50.0 | 3.17e-01 | 100.0% | 23.7% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 51.0 | 3.18e-01 | 100.0% | 17.6% |
| 3c7xA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.58 | 46.0 | 3.35e-01 | 100.0% | 30.1% |
| 1mveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 47.0 | 3.22e-01 | 100.0% | 26.4% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 46.0 | 3.03e-01 | 100.0% | 28.3% |
| 5x7qA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 45.0 | 3.19e-01 | 100.0% | 43.4% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 3.51e-01 | 98.5% | 51.9% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 38.0 | 3.73e-01 | 84.6% | 78.9% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 38.0 | 2.71e-01 | 84.6% | 25.0% |
| 7mdhA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 37.0 | 2.77e-01 | 98.5% | 30.1% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 32.0 | 3.36e-01 | 83.1% | 72.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3435801 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.71 | 62.0 | 3.84e-01 | 100.0% | 17.2% |
| 3307861 | 5.1.8.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 | 0.70 | 52.0 | 4.16e-01 | 100.0% | 39.3% |
| 4030723 | 5.1.4.91 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VID27 | 0.67 | 59.0 | 3.65e-01 | 100.0% | 25.3% |
| 3263883 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.67 | 54.0 | 3.28e-01 | 100.0% | 13.0% |
| 3917609 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 56.0 | 3.70e-01 | 100.0% | 22.5% |
| 3723166 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.64 | 52.0 | 3.29e-01 | 100.0% | 16.7% |
| 3582728 | 5.1.2.53 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_WDR36-Utp21_2nd | 0.64 | 55.0 | 4.16e-01 | 100.0% | 44.7% |
| 3264820 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.64 | 52.0 | 3.24e-01 | 100.0% | 14.5% |
| 3484105 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.64 | 57.0 | 4.35e-01 | 100.0% | 45.3% |
| 3511884 | 5.1.4.262 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 | 0.64 | 55.0 | 3.37e-01 | 100.0% | 30.7% |
| 3410461 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 55.0 | 3.48e-01 | 100.0% | 18.9% |
| 3785258 | 5.1.4.100 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N | 0.63 | 54.0 | 3.24e-01 | 100.0% | 17.5% |
| 3640540 | 5.1.4.97 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop | 0.63 | 53.0 | 3.25e-01 | 100.0% | 21.3% |
| 3629777 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.62 | 50.0 | 2.99e-01 | 100.0% | 10.9% |
| 3709033 | 5.1.4.391 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CFAP43_N | 0.62 | 46.0 | 3.03e-01 | 100.0% | 17.7% |
| 4938611 | 295.1.1.53 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 | 0.62 | 42.0 | 4.26e-01 | 100.0% | 71.9% |
| 3461166 | 5.1.4.414 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C | 0.61 | 51.0 | 3.20e-01 | 100.0% | 15.8% |
| 3809666 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 51.0 | 2.93e-01 | 100.0% | 8.7% |
| 3495281 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 52.0 | 3.26e-01 | 100.0% | 23.6% |
| 3518334 | 5.1.4.179 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 | 0.59 | 52.0 | 3.24e-01 | 100.0% | 25.3% |
| 4025030 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.58 | 48.0 | 2.90e-01 | 100.0% | 12.2% |
| 3194352 | 705.1.1.1 ↗ | beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH | 0.56 | 49.0 | 4.11e-01 | 100.0% | 70.2% |
| 5030263 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.56 | 36.0 | 4.02e-01 | 92.3% | 95.6% |
| 3666497 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.55 | 48.0 | 3.72e-01 | 100.0% | 46.7% |
| 3735753 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 2.58e-01 | 100.0% | 14.3% |
| 4962705 | 4.1.1.491 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26455 | 0.55 | 48.0 | 4.19e-01 | 100.0% | 76.0% |
| 3176791 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.52 | 40.0 | 3.34e-01 | 84.6% | 64.2% |
| 3597963 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 45.0 | 3.85e-01 | 98.5% | 78.1% |
| 1509336 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 32.0 | 3.15e-01 | 83.1% | 54.8% |
| 5081110 | 2004.1.1.1200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 | 0.50 | 44.0 | 3.21e-01 | 100.0% | 64.3% |