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NC_027296.1__YP_009145861.1__ACP46_gp02__00002

Bact-Vir

NC_027296.1__YP_009145861.1__ACP46_gp02__00002

Identity

Accession:
NC_027296 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskavirus› Rhizobium_phage_RHEph06

TaxID: 1220714

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-98
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.73 47.0 5.64e-01 80.2% 100.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.69 49.0 5.16e-01 82.6% 81.8%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 42.0 4.45e-01 70.9% 73.0%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.66 53.0 4.84e-01 88.4% 87.1%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 40.0 3.46e-01 76.7% 40.2%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.65 50.0 4.75e-01 82.6% 85.1%
4c0qB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 50.0 2.93e-01 84.9% 18.8%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.76e-01 82.6% 84.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 42.0 4.68e-01 82.6% 93.7%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.63 53.0 4.48e-01 94.2% 66.7%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.63 42.0 4.39e-01 84.9% 75.6%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 52.0 4.96e-01 90.7% 78.0%
2juaA00 1.20.1480.30 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein 0.62 52.0 4.90e-01 90.7% 80.4%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.62 53.0 4.57e-01 96.5% 81.3%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.62 41.0 4.17e-01 88.4% 67.8%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 48.0 4.62e-01 91.9% 74.2%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.61 44.0 4.66e-01 98.8% 86.5%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.61 37.0 4.04e-01 88.4% 72.9%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 45.0 3.21e-01 80.2% 51.0%
7ru9C01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 48.0 3.40e-01 84.9% 41.2%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.61 50.0 4.33e-01 88.4% 94.6%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 42.0 3.97e-01 72.1% 100.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 40.0 4.04e-01 74.4% 68.2%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 43.0 3.93e-01 87.2% 56.0%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 47.0 3.86e-01 86.0% 93.3%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 46.0 4.55e-01 94.2% 78.5%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.58 50.0 4.53e-01 95.3% 85.3%
2zueA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.57 49.0 4.43e-01 95.3% 77.3%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.57 45.0 4.11e-01 90.7% 62.7%
3p5jB02 1.10.20.120 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.57 41.0 4.04e-01 77.9% 100.0%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 48.0 4.03e-01 94.2% 90.7%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 49.0 3.99e-01 95.3% 71.3%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.55 39.0 2.99e-01 74.4% 87.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 3.92e-01 98.8% 83.9%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 39.0 3.44e-01 79.1% 95.6%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 47.0 3.66e-01 100.0% 86.4%
1wixA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.52 41.0 3.48e-01 88.4% 97.4%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 37.0 3.61e-01 88.4% 67.7%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.52 45.0 3.47e-01 98.8% 80.6%
3v5uA02 1.20.1420.30 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region 0.51 44.0 3.31e-01 98.8% 93.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986491 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.75 51.0 5.15e-01 94.2% 70.6%
3392989 109.4.1.328 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428 0.71 57.0 3.18e-01 87.2% 16.8%
3798432 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 55.0 3.44e-01 83.7% 28.9%
3230315 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.65 45.0 4.21e-01 72.1% 70.5%
3618836 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 3.98e-01 98.8% 40.4%
3779493 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 50.0 3.00e-01 86.0% 26.7%
4442882 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.63 46.0 4.53e-01 84.9% 72.2%
3528346 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 52.0 4.15e-01 90.7% 60.0%
3384514 604.15.1.0 ↗ alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.61 49.0 5.25e-01 89.5% 100.0%
3275525 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 48.0 3.86e-01 86.0% 99.4%
4616083 5000.6.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › Tethering factor for nuclear proteasome cut8 › Tethering factor for nuclear proteasome cut8 › Cut8 0.61 49.0 3.73e-01 90.7% 50.7%
3710713 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 52.0 3.05e-01 98.8% 25.0%
3195070 109.4.1.128 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.60 52.0 3.55e-01 97.7% 27.7%
3766118 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.73e-01 98.8% 50.6%
3927781 3065.1.1.2 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 0.59 46.0 3.66e-01 95.3% 40.6%
4957472 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.59 41.0 2.79e-01 72.1% 41.8%
3741025 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.59 50.0 3.23e-01 98.8% 92.1%
5059804 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.58 48.0 4.50e-01 90.7% 77.1%
3592870 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 4.40e-01 87.2% 80.0%
1685299 6110.1.1.0 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain 0.57 45.0 3.45e-01 86.0% 60.9%
3675632 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 4.23e-01 88.4% 69.6%
4959934 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.55 36.0 3.85e-01 93.0% 77.3%
3813020 109.4.1.546 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 0.55 43.0 2.99e-01 88.4% 29.2%
3701198 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 43.0 3.19e-01 93.0% 67.7%
3787825 101.1.2.539 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_GDS1 0.51 35.0 3.15e-01 73.3% 69.9%
3666961 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.51 40.0 3.54e-01 88.4% 56.9%
D2 high residues 117-160
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.86 58.0 5.17e-01 70.5% 51.7%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 6.38e-01 100.0% 89.6%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 64.0 6.11e-01 100.0% 78.8%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 67.0 6.31e-01 100.0% 88.9%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 6.09e-01 100.0% 82.8%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 55.0 4.37e-01 77.3% 62.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.78e-01 100.0% 70.1%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.80e-01 100.0% 75.9%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.44e-01 100.0% 71.0%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.74 50.0 3.82e-01 70.5% 30.4%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.88e-01 100.0% 91.7%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.05e-01 100.0% 67.9%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 6.08e-01 100.0% 100.0%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 58.0 5.79e-01 100.0% 93.6%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 57.0 5.52e-01 100.0% 81.5%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 58.0 5.60e-01 100.0% 83.0%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 47.0 3.90e-01 72.7% 38.3%
1ug2A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 58.0 5.63e-01 100.0% 84.6%
2ahrA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.70 47.0 3.54e-01 70.5% 99.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.20e-01 100.0% 85.7%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 5.25e-01 95.5% 87.5%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.13e-01 100.0% 82.0%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 46.0 3.85e-01 72.7% 39.7%
2v3cC03 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.68 54.0 4.46e-01 100.0% 51.6%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 55.0 4.90e-01 100.0% 63.4%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.97e-01 100.0% 74.5%
2zcuA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.68 54.0 4.09e-01 93.2% 73.9%
2gh1A02 1.10.150.350 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.67 59.0 4.42e-01 100.0% 63.9%
1irzA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 57.0 5.12e-01 100.0% 71.9%
2mg4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 53.0 4.82e-01 100.0% 81.8%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 51.0 5.02e-01 100.0% 83.3%
2remB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 52.0 3.49e-01 95.5% 29.9%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 55.0 3.51e-01 100.0% 84.1%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 49.0 3.28e-01 100.0% 71.9%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.62 47.0 4.26e-01 93.2% 65.2%
3gruA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.60 48.0 3.84e-01 88.6% 50.0%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.59 50.0 3.65e-01 100.0% 45.4%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 51.0 2.93e-01 100.0% 21.3%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.58 49.0 4.24e-01 100.0% 100.0%
2lrdA00 1.10.10.1840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 42.0 4.00e-01 93.2% 68.9%
1nktA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 2.69e-01 95.5% 91.1%
1pdoA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.56 44.0 3.29e-01 97.7% 32.6%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 45.0 3.54e-01 97.7% 81.0%
1jeyB03 1.10.1600.10 Mainly Alpha › Orthogonal Bundle › Ku70; Chain: A; domain 4 › 0.55 39.0 2.95e-01 75.0% 90.2%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 46.0 3.01e-01 97.7% 25.1%
2dsrG00 4.10.800.10 Few Secondary Structures › Irregular › Invariant Chain; Chain I › Thyroglobulin type-1 0.54 37.0 3.27e-01 77.3% 54.4%
2qq8A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.54 40.0 3.22e-01 81.8% 83.3%
2r7cA02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.53 43.0 3.05e-01 97.7% 61.8%
3k7dA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 42.0 2.73e-01 97.7% 18.0%
1urjA02 1.20.190.40 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain 0.52 41.0 2.82e-01 95.5% 86.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988614 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.87 76.0 6.74e-01 100.0% 82.8%
4963433 101.1.2.919 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5817_CT 0.86 76.0 6.13e-01 100.0% 58.3%
4942687 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 76.0 6.20e-01 100.0% 66.3%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 75.0 6.25e-01 100.0% 57.3%
4972832 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 74.0 6.39e-01 100.0% 75.7%
5030366 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.85 74.0 6.12e-01 100.0% 68.8%
5074539 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 73.0 6.29e-01 100.0% 74.3%
5025361 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.83 72.0 5.96e-01 100.0% 70.5%
4200674 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.81 71.0 4.17e-01 100.0% 13.3%
5023135 101.1.2.97 ↗ alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.80 68.0 5.81e-01 100.0% 70.7%
4950418 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 6.29e-01 100.0% 76.7%
3200990 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 69.0 4.75e-01 100.0% 38.0%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.80 70.0 6.73e-01 100.0% 98.0%
3706397 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 5.97e-01 100.0% 81.5%
3290502 101.35.1.2 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.78 65.0 6.36e-01 100.0% 92.0%
5072522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 67.0 6.26e-01 100.0% 81.8%
4472631 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.77 62.0 6.21e-01 95.5% 100.0%
3256442 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.77 52.0 4.32e-01 70.5% 52.0%
4440593 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.77 64.0 6.28e-01 100.0% 92.0%
3960202 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.76 51.0 4.40e-01 70.5% 54.3%
3334461 101.1.1.270 ↗ alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.76 63.0 5.45e-01 100.0% 64.0%
3341091 101.35.1.6 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.76 63.0 5.67e-01 100.0% 73.8%
5079106 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.76 65.0 4.21e-01 100.0% 24.6%
3243454 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.63e-01 100.0% 68.3%
5079731 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 67.0 5.70e-01 100.0% 65.7%
3574083 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 62.0 6.24e-01 97.7% 95.6%
3713487 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.59e-01 100.0% 75.0%
4106041 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.74 64.0 6.36e-01 100.0% 100.0%
3700088 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.74 64.0 4.60e-01 100.0% 86.2%
3244958 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.54e-01 100.0% 69.2%
4536531 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.73 61.0 5.94e-01 100.0% 92.0%
3229130 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 61.0 5.93e-01 100.0% 88.0%
4640918 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 58.0 5.82e-01 100.0% 97.8%
3454275 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 60.0 5.90e-01 100.0% 88.0%
3894712 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 59.0 5.15e-01 100.0% 58.7%
3868763 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 59.0 5.65e-01 100.0% 81.8%
3903736 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.25e-01 100.0% 62.9%
3483583 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.14e-01 100.0% 58.7%
3318958 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 59.0 5.01e-01 100.0% 55.0%
5046018 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 57.0 4.91e-01 97.7% 55.0%
160865 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 58.0 4.99e-01 100.0% 55.0%
3888041 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 59.0 5.32e-01 100.0% 67.7%
3330107 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 58.0 5.67e-01 100.0% 88.0%
3523514 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 58.0 5.29e-01 100.0% 69.2%
3211563 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 58.0 5.03e-01 100.0% 58.7%
4466751 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.71 60.0 6.06e-01 100.0% 100.0%
3231816 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 57.0 5.31e-01 100.0% 73.3%
3760172 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 4.96e-01 100.0% 56.2%
3420347 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 56.0 4.78e-01 100.0% 51.8%
3246596 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 58.0 5.03e-01 100.0% 61.3%
3279199 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.70 47.0 4.10e-01 70.5% 55.7%
3844546 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 57.0 5.08e-01 100.0% 62.9%
1159997 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 57.0 5.35e-01 100.0% 75.9%
3560402 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.70 58.0 5.24e-01 100.0% 69.2%
3889817 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 58.0 4.91e-01 100.0% 57.5%
3579029 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 57.0 4.85e-01 97.7% 55.1%
3542830 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 57.0 5.18e-01 100.0% 70.8%
4575061 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.69 57.0 5.58e-01 100.0% 92.0%
3989506 3721.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain 0.69 48.0 4.26e-01 72.7% 64.6%
3844618 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 57.0 5.08e-01 100.0% 68.6%
3217489 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 57.0 5.56e-01 100.0% 92.0%
3935738 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 57.0 5.29e-01 100.0% 78.3%
3495504 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 5.64e-01 100.0% 94.0%
3243098 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 57.0 5.16e-01 100.0% 70.8%
3475983 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 54.0 5.35e-01 100.0% 88.0%
3865724 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.68 55.0 5.26e-01 100.0% 80.0%
3882807 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.68 56.0 4.76e-01 100.0% 56.2%
3609352 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.57e-01 100.0% 74.1%
3507787 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.67 54.0 5.34e-01 100.0% 94.0%
3243507 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.66 56.0 5.01e-01 100.0% 73.8%
3183626 102.1.1.116 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_6 0.66 54.0 4.64e-01 100.0% 76.2%
3485420 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 52.0 4.89e-01 100.0% 71.7%
3535807 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 51.0 4.67e-01 100.0% 62.9%
5012798 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 47.0 4.47e-01 88.6% 63.6%
5019849 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.65 52.0 4.77e-01 100.0% 78.5%
4974062 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.64 51.0 4.89e-01 100.0% 94.5%
3519172 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 42.0 4.17e-01 93.2% 90.0%