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NC_027296.1__YP_009145932.1__ACP46_gp73__00073

Bact-Vir

NC_027296.1__YP_009145932.1__ACP46_gp73__00073

Identity

Accession:
NC_027296 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskavirus› Rhizobium_phage_RHEph06

TaxID: 1220714

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-116
PDB
Domain cluster: rep: NC_041917.1__YP_009599889.1__FDH34_gp527__00393__D3-72
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.57e-01 91.4% 78.9%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.86e-01 95.7% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.50e-01 94.3% 78.2%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.59e-01 97.1% 92.3%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.63 45.0 4.37e-01 92.9% 67.1%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 4.69e-01 100.0% 100.0%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.11e-01 92.9% 75.3%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.78e-01 97.1% 95.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.55e-01 100.0% 95.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.57e-01 100.0% 77.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.71e-01 100.0% 84.4%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.58e-01 95.7% 86.9%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.90e-01 97.1% 96.7%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.62 41.0 3.72e-01 80.0% 48.5%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.35e-01 100.0% 70.2%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.73e-01 100.0% 93.2%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.33e-01 95.7% 99.2%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.25e-01 98.6% 75.8%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.44e-01 100.0% 95.0%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.65e-01 97.1% 95.7%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.46e-01 92.9% 100.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.62e-01 100.0% 91.3%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.16e-01 100.0% 76.6%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.12e-01 97.1% 96.1%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.38e-01 80.0% 81.5%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.57 41.0 4.38e-01 75.7% 100.0%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.44e-01 100.0% 89.7%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.25e-01 100.0% 95.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 41.0 3.14e-01 84.3% 84.6%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 46.0 3.85e-01 98.6% 77.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 40.0 3.38e-01 81.4% 71.2%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 41.0 3.23e-01 87.1% 87.2%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.13e-01 80.0% 67.6%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.52 38.0 3.45e-01 81.4% 97.0%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.97e-01 100.0% 85.3%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.51 41.0 2.89e-01 90.0% 46.4%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.64e-01 85.7% 64.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000646 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 4.62e-01 95.7% 92.8%
3892620 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.65 56.0 4.55e-01 97.1% 82.2%
3476139 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.90e-01 100.0% 76.5%
4027577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.63e-01 97.1% 96.8%
3515382 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 4.65e-01 95.7% 86.7%
3789579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.69e-01 95.7% 98.3%
3940063 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 5.02e-01 97.1% 100.0%
3170306 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.65 53.0 4.34e-01 92.9% 91.9%
3479370 220.1.1.94 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.64 52.0 4.11e-01 92.9% 76.9%
3797707 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.43e-01 95.7% 73.3%
3211868 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.41e-01 97.1% 96.4%
4024877 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 53.0 4.29e-01 95.7% 89.0%
3471368 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 56.0 4.86e-01 100.0% 98.2%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 55.0 4.73e-01 100.0% 81.7%
3221476 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.63 50.0 3.57e-01 88.6% 59.5%
5030272 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 47.0 3.53e-01 82.9% 70.3%
3560712 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 4.51e-01 92.9% 89.5%
3788003 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.62 54.0 4.34e-01 100.0% 74.5%
953 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 52.0 4.76e-01 95.7% 97.9%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.94e-01 100.0% 92.6%
3214168 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 4.38e-01 97.1% 81.6%
3261192 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 53.0 4.52e-01 100.0% 80.0%
3913573 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.61 51.0 4.40e-01 97.1% 92.5%
4203238 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.61 53.0 3.68e-01 100.0% 39.2%
3937459 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.68e-01 100.0% 100.0%
3592389 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 4.41e-01 100.0% 81.4%
4940356 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.58 45.0 3.37e-01 87.1% 64.7%
3990213 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 45.0 4.13e-01 90.0% 87.0%
3966647 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.57 45.0 4.13e-01 92.9% 64.2%
3815146 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.57 42.0 2.80e-01 81.4% 99.0%
4054678 601.51.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin 0.57 40.0 2.53e-01 100.0% 13.2%
3164339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 42.0 3.23e-01 81.4% 35.7%
3980359 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 40.0 3.22e-01 80.0% 37.9%
3907056 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.54 46.0 4.07e-01 95.7% 76.7%
3404988 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.54 40.0 3.31e-01 80.0% 88.1%
3389532 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 46.0 3.66e-01 98.6% 73.5%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.77e-01 78.6% 100.0%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.52 37.0 3.71e-01 84.3% 75.7%
6256 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 40.0 3.04e-01 88.6% 71.3%
4944288 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.56e-01 84.3% 62.9%
3952469 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.52 38.0 3.25e-01 81.4% 81.5%
3861490 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.51 42.0 3.82e-01 95.7% 94.0%
3961274 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.50 36.0 3.06e-01 77.1% 68.5%