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NC_027340.1__YP_009147657.1__NW77_145__00145

Bact-Vir

NC_027340.1__YP_009147657.1__NW77_145__00145

Identity

Accession:
NC_027340 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-111
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 50.0 5.84e-01 99.1% 92.1%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.75 51.0 5.59e-01 98.1% 86.2%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 59.0 6.08e-01 100.0% 89.0%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 45.0 3.97e-01 92.5% 44.6%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.68 41.0 3.95e-01 100.0% 52.5%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 57.0 5.57e-01 100.0% 87.7%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 58.0 5.23e-01 98.1% 89.4%
2cw9A00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 58.0 4.84e-01 100.0% 82.4%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 57.0 5.28e-01 99.1% 89.0%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 56.0 5.25e-01 97.2% 92.4%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 56.0 5.01e-01 98.1% 90.5%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.62 46.0 3.94e-01 97.2% 49.4%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 37.0 3.13e-01 70.1% 38.6%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 5.17e-01 98.1% 95.4%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 5.18e-01 98.1% 94.5%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 54.0 5.34e-01 100.0% 91.2%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 54.0 5.21e-01 97.2% 96.7%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 53.0 4.61e-01 94.4% 93.7%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 55.0 4.88e-01 98.1% 91.2%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 54.0 5.40e-01 97.2% 94.5%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 55.0 4.98e-01 100.0% 90.8%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.60 53.0 4.94e-01 98.1% 85.2%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.48e-01 100.0% 88.7%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 54.0 4.86e-01 100.0% 89.6%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 52.0 4.86e-01 97.2% 88.8%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.71e-01 98.1% 81.5%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 53.0 4.78e-01 98.1% 86.6%
3j7yd00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.57e-01 100.0% 85.8%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.82e-01 97.2% 92.5%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.89e-01 97.2% 87.6%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 51.0 4.44e-01 95.3% 75.5%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.90e-01 97.2% 93.7%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 52.0 5.14e-01 98.1% 97.3%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 51.0 4.90e-01 98.1% 91.9%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 53.0 4.94e-01 100.0% 86.9%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 51.0 4.90e-01 98.1% 93.3%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 50.0 4.64e-01 97.2% 92.6%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 50.0 4.44e-01 98.1% 80.5%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 50.0 4.78e-01 98.1% 90.3%
3ehcB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 50.0 4.74e-01 98.1% 90.6%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 50.0 4.74e-01 100.0% 95.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 42.0 4.39e-01 81.3% 97.0%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 50.0 4.73e-01 100.0% 90.6%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 38.0 2.51e-01 93.5% 15.3%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 50.0 4.69e-01 99.1% 82.8%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.71e-01 94.4% 98.1%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 47.0 4.30e-01 97.2% 72.3%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 47.0 4.37e-01 97.2% 77.3%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 47.0 3.78e-01 100.0% 88.1%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 47.0 4.67e-01 100.0% 93.8%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 4.33e-01 97.2% 84.3%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.51 39.0 3.54e-01 82.2% 58.8%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.51 46.0 3.55e-01 100.0% 48.8%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.38e-01 75.7% 77.2%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 46.0 3.73e-01 100.0% 84.9%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.50 40.0 3.19e-01 86.9% 49.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636567 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.74 68.0 5.29e-01 100.0% 78.6%
3513177 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 64.0 6.46e-01 100.0% 96.2%
3227579 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.70 52.0 4.29e-01 95.3% 45.6%
3399719 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 58.0 5.93e-01 93.5% 92.4%
3263321 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 62.0 5.52e-01 98.1% 93.8%
3608271 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 58.0 4.05e-01 94.4% 33.3%
3890249 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 60.0 6.13e-01 100.0% 99.0%
3423924 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.67 58.0 5.61e-01 99.1% 83.3%
3220280 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.66 61.0 6.07e-01 100.0% 97.3%
3521659 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.66 57.0 5.73e-01 100.0% 90.9%
3425035 243.1.1.122 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28340 0.65 54.0 5.66e-01 93.5% 96.0%
3858424 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.65 55.0 5.59e-01 100.0% 92.4%
3732472 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 59.0 5.03e-01 100.0% 92.9%
3595171 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 59.0 4.58e-01 100.0% 89.1%
4225360 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 58.0 5.52e-01 100.0% 83.2%
3895474 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 57.0 5.58e-01 100.0% 88.7%
3521640 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.64 57.0 5.55e-01 100.0% 87.8%
3895949 243.3.1.2 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins 0.64 56.0 5.46e-01 97.2% 87.0%
3181792 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.63 49.0 3.93e-01 95.3% 43.5%
3874957 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 57.0 5.16e-01 100.0% 74.3%
3559415 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.63 57.0 5.44e-01 100.0% 84.8%
1282324 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 57.0 5.35e-01 100.0% 95.5%
3917066 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.63 56.0 5.53e-01 100.0% 90.4%
3546025 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 56.0 5.19e-01 100.0% 77.0%
3588474 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.62 57.0 5.53e-01 100.0% 97.5%
4349674 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.62 53.0 5.13e-01 99.1% 82.5%
3727278 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.62 48.0 3.80e-01 95.3% 40.9%
4063721 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.61 55.0 5.26e-01 100.0% 84.0%
3473466 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 56.0 4.34e-01 100.0% 87.8%
3311465 9.3.1.4 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N 0.61 54.0 4.26e-01 98.1% 79.1%
3517508 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 51.0 5.40e-01 96.3% 100.0%
3749143 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.61 45.0 4.36e-01 96.3% 68.0%
3222760 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 52.0 5.40e-01 100.0% 99.0%
6406 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.61 53.0 4.61e-01 94.4% 93.7%
3843944 243.5.1.7 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 0.61 45.0 4.34e-01 96.3% 68.0%
3520317 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 49.0 5.03e-01 100.0% 91.4%
3510463 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 52.0 5.23e-01 100.0% 93.6%
3510502 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 49.0 5.20e-01 99.1% 100.0%
3279671 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.59 53.0 4.88e-01 97.2% 90.4%
5002369 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 54.0 5.27e-01 100.0% 97.4%
3879513 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 52.0 4.98e-01 95.3% 84.2%
3517310 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 51.0 5.13e-01 100.0% 93.6%
3996178 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 51.0 5.17e-01 95.3% 98.1%
3284100 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.58 51.0 4.38e-01 97.2% 79.4%
3486447 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 45.0 4.54e-01 84.1% 86.7%
3770861 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 51.0 4.54e-01 98.1% 90.7%
4423634 883.1.1.18 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 0.56 51.0 4.08e-01 100.0% 72.3%
197096 310.3.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.55 42.0 3.90e-01 81.3% 71.1%
3503101 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.54 49.0 4.30e-01 98.1% 87.1%
4591679 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.54 48.0 3.37e-01 100.0% 36.4%
3453150 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.54 43.0 3.57e-01 95.3% 47.7%
5027995 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 43.0 3.35e-01 86.0% 59.0%
3917010 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.53 49.0 4.62e-01 98.1% 84.8%
3881351 2484.1.1.39 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.53 46.0 3.81e-01 92.5% 97.2%
5076771 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 44.0 4.44e-01 100.0% 88.2%
3740330 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 44.0 3.96e-01 94.4% 74.2%
3579468 71.1.1.21 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25897 0.52 45.0 3.64e-01 99.1% 83.0%
4994610 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 43.0 4.20e-01 100.0% 82.6%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.52 44.0 3.75e-01 96.3% 56.6%
5072530 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 43.0 4.07e-01 100.0% 74.6%
3973457 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 45.0 2.94e-01 100.0% 22.4%
4117439 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 35.0 3.53e-01 71.0% 76.2%