←Back to structures

NC_027368.1__YP_009948754.1__ACQ26_gp01__00001

Bact-Vir

NC_027368.1__YP_009948754.1__ACQ26_gp01__00001

Identity

Accession:
NC_027368 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Vulnificusvirus› Vibrio_phage_PV94

TaxID: 1451050

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-75
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 43.0 4.42e-01 91.8% 64.4%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.67 47.0 4.81e-01 90.2% 78.9%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 4.27e-01 86.9% 66.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.41e-01 75.4% 80.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 43.0 4.56e-01 75.4% 84.6%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.21e-01 77.0% 83.8%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.61 42.0 3.75e-01 72.1% 88.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 38.0 4.20e-01 70.5% 84.8%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.51e-01 75.4% 50.9%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.52e-01 75.4% 88.5%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 38.0 3.83e-01 96.7% 64.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.38e-01 72.1% 93.6%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.32e-01 75.4% 82.1%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.19e-01 75.4% 79.7%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 3.37e-01 75.4% 47.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 3.82e-01 77.0% 70.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.40e-01 75.4% 95.9%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.57 42.0 3.23e-01 80.3% 77.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.00e-01 90.2% 82.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.44e-01 88.5% 92.5%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.24e-01 75.4% 90.6%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.53e-01 77.0% 63.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.01e-01 80.3% 82.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 42.0 3.35e-01 80.3% 63.5%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.82e-01 80.3% 75.0%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.37e-01 91.8% 86.3%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 3.61e-01 90.2% 71.9%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 37.0 3.60e-01 82.0% 62.7%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.48e-01 80.3% 61.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 3.86e-01 77.0% 88.1%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.13e-01 90.2% 90.2%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.40e-01 80.3% 63.9%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 37.0 2.37e-01 72.1% 24.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.89e-01 75.4% 94.8%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 37.0 2.35e-01 72.1% 24.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 3.90e-01 75.4% 96.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 4.10e-01 91.8% 77.8%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 40.0 2.52e-01 91.8% 78.4%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 40.0 2.50e-01 88.5% 38.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 3.83e-01 90.2% 69.6%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.51 37.0 3.95e-01 90.2% 94.1%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.51 35.0 3.57e-01 85.2% 74.6%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.55e-01 86.9% 81.9%
3utoA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.29e-01 90.2% 61.4%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.19e-01 80.3% 97.1%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 4.06e-01 93.4% 90.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 3.94e-01 95.1% 89.8%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 3.71e-01 90.2% 82.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4352991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 42.0 4.26e-01 91.8% 63.3%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.71e-01 75.4% 75.0%
5068435 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.64 43.0 4.57e-01 70.5% 85.5%
4945673 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 42.0 4.20e-01 91.8% 65.6%
3612107 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.63 42.0 4.32e-01 70.5% 70.0%
4039724 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 42.0 4.18e-01 82.0% 64.6%
3894798 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.63 42.0 4.80e-01 70.5% 100.0%
5030227 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.63 43.0 4.47e-01 70.5% 89.1%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 44.0 3.59e-01 75.4% 48.7%
4475796 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 38.0 4.05e-01 90.2% 70.9%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.61 44.0 3.81e-01 78.7% 64.0%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.74e-01 77.0% 94.0%
3628131 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 44.0 3.82e-01 80.3% 61.0%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.60 42.0 3.53e-01 73.8% 46.7%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.60 43.0 4.10e-01 75.4% 70.0%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 42.0 4.03e-01 75.4% 68.6%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 41.0 3.91e-01 75.4% 61.3%
3620138 3246.1.1.4 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.59 41.0 3.54e-01 73.8% 56.0%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 42.0 4.28e-01 77.0% 93.3%
3571064 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 43.0 3.91e-01 80.3% 74.1%
3912956 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.58 41.0 3.34e-01 75.4% 48.3%
3553625 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 39.0 4.12e-01 70.5% 94.5%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 43.0 3.84e-01 80.3% 68.9%
3936496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 3.60e-01 78.7% 63.0%
3627842 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 3.69e-01 78.7% 71.1%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.13e-01 90.2% 73.8%
3514970 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 41.0 3.65e-01 78.7% 72.2%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 41.0 3.94e-01 80.3% 80.0%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.98e-01 75.4% 93.3%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.56 39.0 3.86e-01 73.8% 69.2%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.56 44.0 4.28e-01 88.5% 77.1%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 41.0 3.66e-01 80.3% 64.4%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.17e-01 90.2% 83.3%
4200330 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.55 43.0 3.56e-01 93.4% 76.0%
5015458 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 37.0 3.47e-01 72.1% 62.5%
4994673 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.54 37.0 2.91e-01 70.5% 40.0%
4187163 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.54 41.0 3.40e-01 98.4% 45.2%
3508441 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 43.0 3.79e-01 93.4% 71.6%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 42.0 3.75e-01 90.2% 70.0%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 40.0 3.63e-01 90.2% 70.0%
3620934 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 40.0 3.77e-01 95.1% 68.8%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 42.0 3.61e-01 93.4% 84.0%
4986625 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.51 37.0 2.90e-01 82.0% 52.7%
3895155 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 42.0 3.88e-01 95.1% 80.0%
4863931 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.48e-01 75.4% 77.6%