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NC_027368.1__YP_009948766.1__ACQ26_gp13__00013

Bact-Vir

NC_027368.1__YP_009948766.1__ACQ26_gp13__00013

Identity

Accession:
NC_027368 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Vulnificusvirus› Vibrio_phage_PV94

TaxID: 1451050

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 128-202
PDB
Domain cluster: rep: NC_010275.2__YP_001650879.1__kp_p14__00014__D11-67
D2 medium residues 5-49
PDB
Domain cluster: rep: MN563793.1__QGF21286.1__X__00016__D59-113
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 49.0 4.60e-01 71.1% 69.1%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.69 53.0 3.96e-01 84.4% 96.6%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 52.0 4.34e-01 84.4% 49.4%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 4.52e-01 84.4% 58.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 47.0 4.06e-01 77.8% 71.6%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 43.0 3.97e-01 71.1% 62.3%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.63 48.0 3.81e-01 88.9% 41.3%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 4.02e-01 75.6% 62.3%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.62 48.0 4.69e-01 86.7% 86.0%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 48.0 4.25e-01 84.4% 57.6%
3fkeA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.62 52.0 4.45e-01 93.3% 78.9%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 48.0 2.75e-01 93.3% 8.6%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.07e-01 86.7% 80.6%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.59e-01 71.1% 50.0%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.57 45.0 3.18e-01 100.0% 69.9%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 39.0 3.10e-01 71.1% 36.6%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.55 41.0 3.22e-01 86.7% 60.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947892 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.78e-01 88.9% 94.0%
3958314 101.1.9.66 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Rv2175c_wHTH 0.73 55.0 5.16e-01 82.2% 90.9%
4034522 857.1.1.2 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PVL_ORF50 0.73 54.0 4.24e-01 80.0% 43.2%
4196673 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.72 56.0 5.28e-01 84.4% 98.2%
4669775 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.69 51.0 4.00e-01 82.2% 41.0%
4982623 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.67 48.0 4.12e-01 80.0% 50.0%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.66 50.0 4.82e-01 88.9% 100.0%
3185732 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.65 54.0 5.04e-01 91.1% 92.7%
3989756 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.64 49.0 4.89e-01 84.4% 95.8%
5031544 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.64 49.0 3.92e-01 88.9% 43.0%
3691758 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.63 53.0 4.98e-01 93.3% 87.3%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.62 50.0 4.69e-01 88.9% 81.8%
3232962 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.62 49.0 4.50e-01 88.9% 75.0%
4947306 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.62 46.0 3.70e-01 86.7% 38.0%
3587609 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.61 46.0 4.50e-01 82.2% 74.0%
3375922 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.56 48.0 3.69e-01 97.8% 52.4%
D3 medium residues 226-312
PDB
Domain cluster: representative