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NC_027381.1__YP_009152177.1__ACQ44_gp76__00076

Bact-Vir

NC_027381.1__YP_009152177.1__ACQ44_gp76__00076

Identity

Accession:
NC_027381 ↗
Kingdom:
phage

Quality

61.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-112
PDB
D2 medium residues 122-200
PDB
D3 medium residues 370-457
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 59.0 4.25e-01 75.0% 64.2%
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 57.0 3.70e-01 73.9% 38.0%
3jurA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 58.0 3.60e-01 75.0% 45.9%
7b7aA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 57.0 3.64e-01 73.9% 36.9%
3eqnA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 59.0 3.81e-01 77.3% 37.0%
4oj6C03 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 57.0 3.62e-01 75.0% 42.2%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 57.0 3.57e-01 75.0% 35.2%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 57.0 3.53e-01 75.0% 43.2%
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 58.0 3.78e-01 78.4% 38.3%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.77 63.0 3.94e-01 88.6% 31.7%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.76 57.0 3.49e-01 79.5% 30.7%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.69 52.0 3.23e-01 79.5% 23.5%
4gm2A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.59 44.0 3.54e-01 80.7% 96.7%
4zrmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 45.0 3.47e-01 86.4% 59.7%
2ab1A00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.56 40.0 3.61e-01 75.0% 70.5%
1h80B00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.54 46.0 3.05e-01 100.0% 86.7%
5nmxB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 36.0 3.63e-01 88.6% 67.7%
5ezqA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.45e-01 89.8% 86.4%
6gnaA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 3.61e-01 77.3% 68.2%
1fyvA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.52 41.0 3.40e-01 86.4% 63.4%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 3.28e-01 78.4% 65.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4539832 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 57.0 3.83e-01 72.7% 42.9%
1121177 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 59.0 4.25e-01 75.0% 64.2%
4517293 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 57.0 3.56e-01 73.9% 43.1%
3307012 207.2.2.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › Glyco_hydro_28 0.80 58.0 4.67e-01 75.0% 86.9%
377410 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.80 58.0 3.60e-01 75.0% 45.7%
3380520 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.80 58.0 3.60e-01 75.0% 34.9%
4104747 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.79 57.0 3.60e-01 75.0% 41.7%
3299980 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.79 57.0 3.59e-01 75.0% 41.7%
3820657 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.79 57.0 3.54e-01 75.0% 31.8%
1222072 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.79 57.0 3.52e-01 75.0% 42.6%
3824788 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.78 57.0 3.75e-01 76.1% 38.5%
5082766 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.78 59.0 3.89e-01 79.5% 43.9%
364252 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.78 64.0 3.94e-01 87.5% 31.5%
1714446 207.2.1.66 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › WcaM 0.77 59.0 3.62e-01 79.5% 24.7%
3804805 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.77 59.0 3.76e-01 79.5% 36.7%
3341224 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.77 58.0 3.72e-01 79.5% 39.8%
3987209 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.77 57.0 3.52e-01 77.3% 31.6%
4021613 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.76 56.0 3.63e-01 77.3% 47.3%
3195366 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.76 56.0 3.62e-01 77.3% 47.4%
3287619 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.76 58.0 3.64e-01 79.5% 30.4%
2701717 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.76 55.0 3.52e-01 75.0% 30.0%
3385173 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.76 55.0 3.64e-01 75.0% 44.5%
3649226 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.76 59.0 3.74e-01 81.8% 36.1%
339124 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.76 57.0 3.59e-01 79.5% 35.8%
3354845 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.75 57.0 3.65e-01 79.5% 39.0%
2491348 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 54.0 3.58e-01 76.1% 38.8%
3368264 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.72 63.0 3.90e-01 94.3% 44.1%
3198843 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.70 57.0 3.30e-01 88.6% 23.7%
3668060 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.67 48.0 3.47e-01 75.0% 63.6%
3294947 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.55 47.0 3.13e-01 100.0% 72.8%
5082245 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 47.0 3.04e-01 100.0% 61.0%
3674708 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.55 47.0 3.18e-01 100.0% 75.7%
3307314 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.55 47.0 3.09e-01 100.0% 60.7%
3802732 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.54 46.0 3.21e-01 100.0% 81.2%
3820891 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.54 46.0 3.12e-01 100.0% 71.4%
4211588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 2.99e-01 100.0% 68.4%
3670547 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.54 45.0 3.13e-01 100.0% 64.1%
3326988 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.53 45.0 2.97e-01 100.0% 62.5%
3346616 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.53 44.0 3.00e-01 96.6% 71.8%
3814525 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.53 45.0 3.03e-01 100.0% 79.7%
2139004 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.52 43.0 2.84e-01 94.3% 55.7%
None 0.52 44.0 3.00e-01 100.0% 71.4%
3648137 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.52 44.0 3.03e-01 100.0% 71.6%
4958799 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.52 43.0 3.18e-01 98.9% 76.8%
3422718 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.51 43.0 2.88e-01 100.0% 81.0%
4079489 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.50 43.0 2.85e-01 100.0% 90.7%
3804144 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.50 42.0 2.81e-01 100.0% 63.7%
4992095 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 38.0 3.02e-01 84.1% 52.2%
D4 medium residues 525-571_870-904
PDB
D5 medium residues 609-704
PDB
D6 medium residues 934-1081
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 40.9 2.80e-10 37.2% 75.9%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 64.0 7.13e-01 87.8% 91.6%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 69.0 6.67e-01 91.2% 83.9%
2ja4A00 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.54 20.0 2.46e-01 79.1% 48.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 31.0 3.13e-01 90.5% 59.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
382463 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.90 64.0 7.17e-01 86.5% 90.0%
1683846 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.79 59.0 6.47e-01 91.2% 91.2%
1509442 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.78 69.0 6.94e-01 93.9% 92.1%
4983091 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 31.0 3.27e-01 89.2% 60.7%
3589823 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 20.0 3.04e-01 83.1% 76.9%
4993906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 31.0 3.23e-01 89.2% 60.7%
5054049 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 31.0 3.56e-01 88.5% 75.7%
4967223 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 32.0 3.36e-01 89.2% 66.2%
4938398 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 31.0 3.16e-01 89.2% 58.6%
4265142 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 30.0 3.05e-01 89.2% 56.0%
3703290 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 30.0 3.03e-01 89.2% 56.7%
4971920 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 32.0 3.51e-01 90.5% 76.0%