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NC_027382.1__YP_009152205.1__ACQ86_gp19__00019

Bact-Vir

NC_027382.1__YP_009152205.1__ACQ86_gp19__00019

Identity

Accession:
NC_027382 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muvirus› Shigella_phage_SfMu

TaxID: 1567022

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
Domain cluster: rep: MZ568827.1__QYW06207.1__MuM161_p18__00018__D29-90
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26867.1 best Phage_Mu_gp18 109.3 1.00e-31 95.9% 93.1%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2honA02 1.20.1250.30 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 40.0 3.11e-01 91.8% 29.5%
3kcuD00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.67 52.0 3.63e-01 84.9% 43.1%
1zvuA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.66 46.0 3.73e-01 72.6% 87.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.66 54.0 5.03e-01 90.4% 80.2%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.64 34.0 3.13e-01 91.8% 41.1%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 45.0 3.87e-01 74.0% 68.8%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.63 51.0 4.27e-01 89.0% 88.0%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 55.0 4.35e-01 100.0% 94.1%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.61 46.0 3.53e-01 79.5% 56.6%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.60 51.0 4.81e-01 98.6% 91.3%
2vkhA03 1.10.10.1780 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 41.0 4.21e-01 93.2% 76.8%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.59 47.0 4.33e-01 89.0% 88.7%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 42.0 3.76e-01 76.7% 98.1%
3nkeA00 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 51.0 3.82e-01 100.0% 62.8%
2oqmB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 39.0 3.02e-01 72.6% 74.6%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 3.84e-01 82.2% 67.6%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 42.0 3.52e-01 90.4% 46.0%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.57 34.0 3.33e-01 91.8% 56.4%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 50.0 3.87e-01 100.0% 84.4%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.56 38.0 3.17e-01 71.2% 83.7%
1yhlA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 41.0 2.62e-01 78.1% 37.0%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.55 38.0 3.99e-01 71.2% 83.1%
3t8vA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.55 43.0 2.82e-01 86.3% 84.4%
3lerA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 3.08e-01 94.5% 63.0%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 46.0 3.47e-01 94.5% 44.4%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.54 42.0 3.21e-01 83.6% 86.6%
2wh5A00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.54 37.0 3.49e-01 86.3% 57.8%
1hbkA00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.54 37.0 3.51e-01 86.3% 58.4%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.54 37.0 3.30e-01 72.6% 82.7%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 3.71e-01 82.2% 84.5%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.53 38.0 3.18e-01 76.7% 50.0%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.52 44.0 2.92e-01 100.0% 48.1%
5uagE00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.52 38.0 3.57e-01 78.1% 62.9%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 46.0 3.59e-01 97.3% 54.6%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.51 36.0 3.27e-01 72.6% 87.5%
3bg2A02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.51 40.0 3.48e-01 84.9% 76.8%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.50 40.0 3.34e-01 86.3% 88.0%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 40.0 2.69e-01 89.0% 23.5%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 34.0 2.72e-01 72.6% 76.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045518 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.70 39.0 2.64e-01 72.6% 17.0%
4015915 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.70 37.0 3.65e-01 100.0% 47.5%
3579002 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.65 43.0 3.26e-01 72.6% 27.0%
4010426 1079.1.1.13 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp 0.62 52.0 4.01e-01 98.6% 88.1%
3670388 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 52.0 4.27e-01 93.2% 55.6%
5017280 2002.1.1.172 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C 0.60 46.0 3.12e-01 84.9% 91.4%
4263317 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.59 50.0 4.24e-01 95.9% 92.8%
4024514 5059.1.1.8 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.59 48.0 4.10e-01 89.0% 76.5%
3594453 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.58 43.0 3.02e-01 79.5% 44.5%
3231608 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.57 37.0 3.19e-01 82.2% 39.2%
4624818 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.56 43.0 4.07e-01 83.6% 91.1%
4036645 5086.1.1.92 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.56 47.0 3.48e-01 93.2% 83.1%
55608 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.56 39.0 3.73e-01 86.3% 61.6%
4029625 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.56 38.0 3.43e-01 87.7% 49.5%
4022918 1015.1.1.0 ↗ alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs 0.55 46.0 3.45e-01 91.8% 72.4%
3413790 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.55 37.0 3.65e-01 86.3% 65.0%
4227260 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 38.0 3.24e-01 74.0% 72.8%
3959922 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 44.0 3.83e-01 89.0% 60.9%
4273738 5069.1.1.2 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.53 43.0 3.02e-01 87.7% 78.2%
3309169 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.53 44.0 3.61e-01 90.4% 53.8%
2755633 2008.1.1.24 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDCD9 0.52 44.0 2.79e-01 100.0% 17.8%
3984133 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.51 38.0 2.13e-01 80.8% 36.0%
4927967 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.51 43.0 2.81e-01 100.0% 90.8%
3963135 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.51 38.0 2.97e-01 84.9% 53.7%
3490709 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.51 41.0 3.36e-01 90.4% 74.5%
3962942 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.51 35.0 2.78e-01 71.2% 72.7%
3187973 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 44.0 2.79e-01 100.0% 32.0%
3648224 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.50 38.0 3.13e-01 83.6% 76.1%