Back to structures

NC_027397.1__YP_009153053.1__ACQ41_gp27__00027

Bact-Vir

NC_027397.1__YP_009153053.1__ACQ41_gp27__00027

Identity

Accession:
NC_027397 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 224-310
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 68.0 1.10e-18 86.2% 97.4%
D2 high residues 322-421
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i9eA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 32.0 3.09e-01 82.0% 47.8%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 32.0 3.43e-01 100.0% 66.3%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 36.0 3.21e-01 73.0% 91.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486540 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 36.0 2.81e-01 80.0% 27.7%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 27.0 2.61e-01 77.0% 38.3%
3429075 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 33.0 3.69e-01 77.0% 78.7%
4562403 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.54 30.0 3.40e-01 85.0% 72.0%
3507945 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.51 39.0 3.12e-01 83.0% 64.2%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 35.0 3.17e-01 72.0% 91.4%
D3 high residues 645-751
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.76e-01 87.9% 98.7%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 5.52e-01 93.5% 89.8%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.67 47.0 5.28e-01 87.9% 97.5%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.69e-01 99.1% 71.4%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 38.0 4.66e-01 86.0% 93.8%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 5.50e-01 99.1% 98.9%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 41.0 4.63e-01 88.8% 87.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.91e-01 97.2% 80.0%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 5.27e-01 96.3% 93.4%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.96e-01 96.3% 86.5%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.93e-01 97.2% 92.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 5.16e-01 100.0% 88.3%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.63 44.0 4.23e-01 86.0% 62.9%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.91e-01 100.0% 77.5%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.80e-01 99.1% 78.1%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.75e-01 100.0% 83.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.81e-01 99.1% 83.5%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.27e-01 100.0% 60.4%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 35.0 4.32e-01 78.5% 100.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.69e-01 100.0% 80.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.75e-01 98.1% 81.1%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.56e-01 100.0% 70.7%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.57e-01 99.1% 86.4%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.25e-01 100.0% 62.0%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.63e-01 100.0% 80.0%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.97e-01 99.1% 91.2%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.18e-01 100.0% 61.8%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 41.0 4.67e-01 85.0% 98.7%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.53e-01 87.9% 87.4%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 4.42e-01 98.1% 85.1%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.35e-01 100.0% 76.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.46e-01 97.2% 75.7%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.33e-01 100.0% 70.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.59e-01 98.1% 81.9%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 4.52e-01 87.9% 100.0%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 4.55e-01 94.4% 93.9%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 4.37e-01 100.0% 85.4%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.13e-01 97.2% 64.2%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.05e-01 100.0% 60.6%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.03e-01 100.0% 60.6%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 38.0 4.38e-01 95.3% 100.0%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.16e-01 97.2% 79.2%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 45.0 4.75e-01 86.9% 100.0%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 35.0 3.85e-01 84.1% 77.6%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.69e-01 99.1% 85.8%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.56 49.0 4.08e-01 100.0% 55.9%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 42.0 4.37e-01 97.2% 89.1%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.55 40.0 4.38e-01 94.4% 97.6%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 4.08e-01 97.2% 79.6%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.18e-01 99.1% 84.5%
1bg1A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 44.0 4.22e-01 89.7% 80.3%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 28.0 3.28e-01 83.2% 72.6%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.51 33.0 3.75e-01 71.0% 88.6%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003621 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 55.0 5.85e-01 85.0% 78.9%
5029778 101.1.2.43 alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.80 58.0 6.37e-01 86.9% 88.9%
3688358 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.74 52.0 5.94e-01 88.8% 96.2%
2774435 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 54.0 5.45e-01 97.2% 86.7%
5050784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 5.36e-01 99.1% 93.3%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 49.0 4.19e-01 99.1% 47.2%
4963293 101.1.2.921 alpha arrays › HTH › HTH › winged helix domain › DUF7109 0.66 46.0 5.01e-01 95.3% 86.7%
3739675 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 54.0 5.37e-01 100.0% 84.5%
4974161 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 54.0 5.18e-01 100.0% 76.6%
4988184 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 48.0 5.17e-01 97.2% 91.1%
4109840 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 53.0 5.47e-01 100.0% 94.0%
4928669 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 5.51e-01 100.0% 90.5%
5036311 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 5.56e-01 100.0% 95.0%
4983039 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 5.57e-01 100.0% 96.0%
3875839 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 5.32e-01 100.0% 82.6%
4545670 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 53.0 5.54e-01 99.1% 96.0%
5044892 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 50.0 4.91e-01 98.1% 76.5%
3649376 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 53.0 4.72e-01 99.1% 62.7%
None 0.64 51.0 5.25e-01 97.2% 90.0%
4962870 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 53.0 5.11e-01 100.0% 78.0%
4978412 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 49.0 4.20e-01 100.0% 50.3%
4978090 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 49.0 3.94e-01 99.1% 40.9%
3700237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.95e-01 98.1% 73.1%
5073929 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 52.0 5.22e-01 100.0% 86.4%
3642800 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 52.0 5.13e-01 97.2% 82.5%
4314672 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 50.0 5.05e-01 100.0% 84.8%
3287678 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 41.0 4.64e-01 89.7% 88.7%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.63 44.0 4.45e-01 99.1% 73.3%
4524417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 5.02e-01 100.0% 90.4%
4975513 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 53.0 5.30e-01 100.0% 89.1%
3625612 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 52.0 5.35e-01 100.0% 94.0%
5025840 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 5.24e-01 99.1% 94.0%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 5.05e-01 100.0% 97.6%
2609 101.1.2.38 alpha arrays › HTH › HTH › winged helix domain › RTP 0.63 51.0 4.91e-01 100.0% 77.5%
4979490 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 52.0 5.04e-01 100.0% 80.0%
4974951 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 48.0 5.02e-01 100.0% 90.5%
5005164 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 52.0 5.21e-01 100.0% 88.9%
3286277 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 48.0 4.08e-01 100.0% 48.9%
4947441 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.75e-01 97.2% 90.6%
4982781 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 52.0 5.21e-01 100.0% 88.2%
5055466 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 56.0 5.49e-01 100.0% 92.2%
4959599 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 49.0 4.82e-01 98.1% 78.9%
5017942 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 43.0 4.44e-01 100.0% 76.0%
3254841 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.62 52.0 5.34e-01 100.0% 92.4%
4947948 101.1.2.876 alpha arrays › HTH › HTH › winged helix domain › tRNA-synt_2d 0.62 44.0 4.88e-01 99.1% 94.1%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 4.78e-01 95.3% 95.0%
5033035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.49e-01 100.0% 71.2%
3547256 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.62 53.0 5.10e-01 91.6% 90.0%
3927517 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 51.0 5.29e-01 100.0% 95.0%
4986012 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 41.0 3.35e-01 94.4% 34.8%
5029327 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 56.0 5.39e-01 100.0% 89.2%
4957079 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 42.0 4.51e-01 98.1% 83.3%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 48.0 4.06e-01 99.1% 49.4%
4983914 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 44.0 4.85e-01 96.3% 98.8%
5065027 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 48.0 4.41e-01 100.0% 62.8%
5011620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.64e-01 98.1% 87.8%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.61 45.0 4.52e-01 97.2% 76.4%
4965874 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 45.0 4.22e-01 100.0% 62.7%
5054122 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 44.0 3.86e-01 100.0% 50.6%
5001098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.77e-01 99.1% 93.3%
164542 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 45.0 4.46e-01 97.2% 75.7%
4943632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.36e-01 100.0% 71.7%
3735293 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.60 48.0 3.65e-01 92.5% 35.8%
5006003 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.60 45.0 4.36e-01 100.0% 71.7%
4946114 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 38.0 3.89e-01 91.6% 65.4%
4547759 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.59 38.0 4.50e-01 89.7% 100.0%
4976218 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 47.0 4.57e-01 100.0% 76.7%
5070883 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 44.0 4.68e-01 100.0% 93.3%
4965203 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.59 44.0 4.39e-01 100.0% 77.8%
5055444 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 41.0 4.26e-01 100.0% 78.0%
4476647 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 44.0 4.08e-01 100.0% 60.7%
5041543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 44.0 4.06e-01 99.1% 60.7%
4999532 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 50.0 3.89e-01 100.0% 42.6%
5016748 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.58 44.0 4.29e-01 100.0% 72.5%
5080684 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 43.0 3.84e-01 99.1% 54.2%
5012029 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.58 44.0 4.31e-01 100.0% 73.3%
415845 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.58 44.0 4.20e-01 100.0% 69.9%
3290058 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.58 44.0 4.00e-01 100.0% 59.3%
4937951 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 43.0 4.46e-01 100.0% 87.0%
5010738 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.57 44.0 4.31e-01 99.1% 75.4%
4998580 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.43e-01 99.1% 90.0%
3604578 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 43.0 4.35e-01 99.1% 81.9%
5031063 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 42.0 4.52e-01 100.0% 94.4%
4950547 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 38.0 4.05e-01 100.0% 80.0%
4983992 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 43.0 3.83e-01 98.1% 56.8%
5058943 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.11e-01 98.1% 74.2%
5058727 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.94e-01 98.1% 62.8%
5075111 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 40.0 3.69e-01 99.1% 59.0%
3602264 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 36.0 3.92e-01 94.4% 88.2%
4967969 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.53 41.0 3.57e-01 99.1% 53.9%
5081199 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 40.0 3.67e-01 100.0% 59.3%
3497072 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 38.0 3.78e-01 96.3% 73.6%
2324001 101.1.2.453 alpha arrays › HTH › HTH › winged helix domain › WHD_DnaB 0.52 42.0 3.77e-01 99.1% 62.7%
5069995 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 40.0 3.18e-01 99.1% 39.6%
4984935 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 2.75e-01 94.4% 34.0%
D4 medium residues 1-85
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.57 47.0 4.20e-01 90.6% 75.6%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.57 48.0 4.46e-01 91.8% 89.6%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.24e-01 80.0% 96.8%
4u04A02 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.56 45.0 3.39e-01 90.6% 49.8%
2i10B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.93e-01 89.4% 98.4%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.53 39.0 3.15e-01 80.0% 90.3%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 36.0 2.74e-01 70.6% 92.4%
4gw9A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 46.0 3.44e-01 100.0% 74.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036694 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.54 33.0 3.09e-01 82.4% 48.6%
4046483 6056.1.1.0 alpha arrays › SP1917-like › SP1917-like › SP1917-like 0.52 37.0 3.60e-01 74.1% 90.5%
D5 medium residues 86-201
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 48.2 2.40e-12 93.1% 64.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.66 55.0 3.82e-01 89.7% 75.3%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.65 53.0 3.73e-01 88.8% 72.8%
3h20A02 3.30.70.1790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RepB DNA-primase, N-terminal domain 0.62 51.0 5.35e-01 90.5% 100.0%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.61 49.0 3.87e-01 85.3% 49.2%
1rniA02 3.30.2250.10 Alpha Beta › 2-Layer Sandwich › Prim-pol fold › Bifunctional DNA primase/polymerase domain 0.59 53.0 5.35e-01 100.0% 99.1%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 4.37e-01 85.3% 91.1%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.53 42.0 3.42e-01 87.1% 96.2%
2xhcA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.52 38.0 4.12e-01 83.6% 96.8%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.85e-01 87.9% 98.6%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 3.25e-01 96.6% 68.8%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.50 40.0 3.90e-01 87.9% 77.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959587 862.1.1.3 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.77 70.0 6.08e-01 100.0% 65.9%
5054620 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.66 59.0 4.62e-01 100.0% 64.8%
5037338 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.66 58.0 4.53e-01 100.0% 68.3%
5050906 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.64 58.0 4.26e-01 100.0% 69.2%
2721360 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.62 55.0 4.72e-01 97.4% 61.6%
3989046 862.1.1.8 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.62 54.0 4.39e-01 98.3% 67.1%
3589190 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.55 48.0 3.94e-01 99.1% 57.4%
3344177 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.54 19.0 2.91e-01 79.3% 77.8%
4101334 304.28.1.3 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 0.53 36.0 3.95e-01 70.7% 87.8%
4945789 304.48.1.110 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS_FLD 0.53 40.0 3.70e-01 82.8% 96.9%
3486001 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.53 34.0 3.99e-01 87.1% 100.0%
4033642 304.8.1.42 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3388 0.53 38.0 4.09e-01 81.9% 91.6%
3381288 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 35.0 3.91e-01 85.3% 91.8%
4979949 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 35.0 3.95e-01 87.1% 98.8%
3640407 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.52 41.0 2.97e-01 84.5% 62.8%
5035531 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.52 39.0 3.61e-01 82.8% 98.8%
4029970 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.51 34.0 3.90e-01 86.2% 97.5%
5051761 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.51 36.0 3.92e-01 86.2% 92.2%
3686938 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 35.0 3.89e-01 71.6% 95.3%
3449952 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 35.0 3.87e-01 81.0% 92.2%
3224917 304.9.1.18 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind 0.51 36.0 4.07e-01 87.9% 100.0%
3626328 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.50 33.0 3.79e-01 87.1% 97.5%
3424438 304.9.1.47 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 0.50 34.0 3.65e-01 74.1% 82.0%
D6 medium residues 427-469_483-497_594-630
PDB
D7 medium residues 470-482_498-593_631-642
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 66.8 3.90e-18 81.8% 81.4%