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NC_027397.1__YP_009153062.1__ACQ41_gp36__00036

Bact-Vir

NC_027397.1__YP_009153062.1__ACQ41_gp36__00036

Identity

Accession:
NC_027397 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-50
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 70.0 4.63e-01 86.0% 23.7%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 76.0 6.68e-01 100.0% 78.1%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.85 72.0 5.98e-01 94.0% 55.8%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.84 75.0 6.12e-01 100.0% 57.8%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 74.0 5.72e-01 100.0% 53.7%
1m56C01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 70.0 6.27e-01 94.0% 78.3%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.83 71.0 4.79e-01 94.0% 27.2%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.83 72.0 5.19e-01 100.0% 38.6%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 73.0 6.36e-01 100.0% 70.7%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.82 75.0 5.82e-01 100.0% 51.0%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 71.0 6.25e-01 100.0% 72.0%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.82 73.0 5.51e-01 100.0% 42.7%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.81 66.0 4.82e-01 92.0% 35.8%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 68.0 5.55e-01 96.0% 57.1%
3dboB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.78 53.0 3.91e-01 70.0% 27.8%
2gw1A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.77 62.0 3.66e-01 90.0% 12.2%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.76 66.0 4.59e-01 100.0% 34.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.72 62.0 5.73e-01 100.0% 75.4%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.70 59.0 4.53e-01 92.0% 50.5%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.66 44.0 4.16e-01 70.0% 68.9%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 52.0 3.32e-01 98.0% 27.8%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.60 42.0 3.70e-01 72.0% 84.1%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.59 46.0 3.35e-01 86.0% 38.7%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 49.0 3.28e-01 100.0% 50.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058842 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.97 91.0 7.26e-01 100.0% 55.6%
4613072 101.1.2.721 alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113 0.94 87.0 5.86e-01 100.0% 30.3%
4950709 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.90 76.0 6.91e-01 92.0% 70.8%
4964878 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.89 76.0 6.78e-01 94.0% 67.1%
4946275 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.89 81.0 4.98e-01 100.0% 19.6%
5003455 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.89 81.0 5.58e-01 100.0% 32.3%
5066728 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.89 80.0 6.64e-01 100.0% 60.0%
4965632 192.7.1.85 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349 0.87 77.0 7.02e-01 98.0% 75.4%
5048061 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.87 70.0 6.77e-01 88.0% 83.6%
3626992 632.8.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.87 77.0 5.99e-01 100.0% 47.6%
4038742 150.5.1.53 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE 0.86 76.0 6.12e-01 100.0% 54.7%
3619435 192.8.1.36 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.86 77.0 6.17e-01 100.0% 52.6%
3485269 192.6.1.3 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_metazoa 0.84 64.0 6.71e-01 82.0% 91.1%
5044927 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 68.0 6.44e-01 90.0% 76.7%
4174467 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.84 74.0 6.09e-01 100.0% 57.8%
4530477 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.83 63.0 6.63e-01 82.0% 95.6%
3989298 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.82 74.0 5.06e-01 100.0% 30.9%
4657529 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.82 59.0 6.19e-01 78.0% 86.7%
3927737 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.81 71.0 5.72e-01 100.0% 51.6%
3390898 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.81 70.0 5.61e-01 100.0% 52.0%
3768875 150.1.1.122 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › CECR6_TMEM121 0.79 70.0 4.47e-01 100.0% 21.3%
3905033 3567.1.1.9 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › CECR6_TMEM121 0.78 70.0 4.60e-01 100.0% 25.5%
3568351 3390.1.1.5 extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › CECR6_TMEM121 0.78 70.0 4.43e-01 100.0% 21.3%
3909706 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 67.0 5.66e-01 100.0% 60.0%
5047626 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 4.53e-01 94.0% 38.4%
D2 high residues 57-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25311.2 best WDGH 29.2 1.30e-06 84.8% 57.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.62 35.0 3.79e-01 70.9% 65.2%
4ffgA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 43.0 2.84e-01 77.2% 46.3%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 43.0 2.93e-01 79.7% 41.2%
3lxuX02 2.20.25.690 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 39.0 4.05e-01 79.7% 76.4%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 42.0 2.86e-01 78.5% 34.2%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 4.29e-01 94.9% 76.7%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 44.0 3.66e-01 93.7% 85.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.90e-01 82.3% 88.5%
1sjdB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.55e-01 86.1% 87.8%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.95e-01 84.8% 88.1%
2gpiA00 3.30.160.140 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like 0.51 37.0 3.60e-01 77.2% 87.9%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.83e-01 100.0% 69.5%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.50 36.0 3.80e-01 75.9% 93.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2814146 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.69 47.0 4.79e-01 70.9% 85.5%
3703176 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.66 33.0 4.29e-01 94.9% 86.4%
4426056 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.62 46.0 3.68e-01 78.5% 83.9%
3213262 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.61 42.0 3.91e-01 70.9% 84.0%
3807026 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 43.0 3.12e-01 74.7% 54.9%
4969523 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.60 37.0 4.40e-01 89.9% 92.6%
3618512 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 43.0 3.03e-01 79.7% 35.5%
3479960 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 44.0 2.93e-01 83.5% 39.7%
3912292 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 43.0 2.83e-01 81.0% 27.7%
3939218 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 45.0 2.97e-01 88.6% 30.6%
3585833 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 47.0 4.24e-01 100.0% 67.3%
3510389 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 46.0 4.44e-01 100.0% 80.9%
3308710 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 4.15e-01 83.5% 84.3%
5073568 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 39.0 2.96e-01 93.7% 29.8%
3624688 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 41.0 2.75e-01 81.0% 26.9%
5015727 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 42.0 3.88e-01 83.5% 96.0%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.53 35.0 3.94e-01 91.1% 88.3%
3797651 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 4.01e-01 97.5% 74.4%
3995595 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 44.0 3.61e-01 87.3% 75.6%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 37.0 3.95e-01 84.8% 84.3%
4361334 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.53 40.0 3.46e-01 87.3% 51.2%
3503204 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 44.0 4.21e-01 100.0% 77.9%
3996824 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 40.0 2.70e-01 82.3% 34.4%
5072620 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 39.0 2.87e-01 89.9% 29.5%
2096018 330.17.1.1 a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA4 › Anti-CRISPR protein AcrIIA4 › AcrIIA4 0.52 43.0 4.24e-01 100.0% 82.8%
4265586 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 41.0 3.54e-01 84.8% 56.0%
5079630 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 37.0 2.83e-01 89.9% 30.8%
4459163 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 41.0 3.55e-01 86.1% 56.8%
3743299 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.51 37.0 3.32e-01 78.5% 54.5%
4004358 252.2.1.3 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.51 32.0 3.78e-01 92.4% 98.0%
4173773 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 3.96e-01 84.8% 85.7%
4930470 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 3.94e-01 86.1% 89.4%
4514268 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 3.91e-01 86.1% 79.8%
4955709 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 3.51e-01 86.1% 60.0%
3924385 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.51 46.0 3.03e-01 98.7% 39.7%
5046464 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 39.0 3.47e-01 86.1% 57.4%
2641778 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.51 44.0 4.44e-01 100.0% 93.9%
4434271 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.50 39.0 3.42e-01 86.1% 56.0%
4426175 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.50 35.0 3.75e-01 73.4% 97.1%