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NC_027399.1__YP_010842907.1__ACQ27_gp023__00023

Bact-Vir

NC_027399.1__YP_010842907.1__ACQ27_gp023__00023

Identity

Accession:
NC_027399 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-42
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 67.0 4.70e-01 100.0% 47.0%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 3.84e-01 100.0% 26.3%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 4.39e-01 100.0% 40.9%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.38e-01 100.0% 86.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 3.74e-01 100.0% 26.8%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.71 47.0 3.53e-01 78.4% 26.1%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 4.60e-01 100.0% 54.2%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 3.96e-01 100.0% 34.8%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 3.81e-01 100.0% 35.2%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 45.0 3.06e-01 73.0% 23.3%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.62 47.0 3.42e-01 100.0% 28.4%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.60 44.0 2.79e-01 83.8% 15.8%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.60 45.0 3.61e-01 100.0% 37.2%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.10e-01 81.1% 30.3%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 45.0 3.12e-01 100.0% 22.3%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 3.65e-01 100.0% 48.6%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 42.0 3.46e-01 91.9% 39.1%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 41.0 3.44e-01 100.0% 40.2%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 44.0 2.87e-01 97.3% 20.4%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 44.0 3.65e-01 100.0% 75.6%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 42.0 3.31e-01 100.0% 55.9%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.53 42.0 2.85e-01 100.0% 59.3%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.52 42.0 2.86e-01 97.3% 68.9%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 2.86e-01 100.0% 62.7%
2wzpR02 3.55.50.50 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 0.52 41.0 3.29e-01 100.0% 99.0%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 39.0 3.39e-01 100.0% 53.2%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 38.0 3.34e-01 100.0% 51.4%
3m1cA01 3.10.360.40 Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › 0.51 41.0 3.84e-01 100.0% 82.7%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 2.78e-01 100.0% 52.7%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.51 37.0 3.01e-01 97.3% 49.0%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 36.0 2.56e-01 100.0% 67.6%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 35.0 3.15e-01 94.6% 50.0%
1hyhC02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.50 40.0 2.80e-01 100.0% 76.4%
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 34.0 2.68e-01 100.0% 26.1%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.50 34.0 2.59e-01 70.3% 100.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936984 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 71.0 4.90e-01 100.0% 44.9%
3941219 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.78 68.0 3.82e-01 100.0% 13.0%
3176357 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.78 44.0 2.44e-01 73.0% 4.1%
5061514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 67.0 4.22e-01 100.0% 24.7%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 67.0 5.10e-01 100.0% 65.9%
5012709 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 58.0 3.53e-01 100.0% 13.6%
5082509 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.73 62.0 4.26e-01 100.0% 40.8%
4004118 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.73 61.0 3.91e-01 100.0% 26.5%
5082698 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.73 61.0 4.68e-01 100.0% 48.9%
5016560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 63.0 4.67e-01 100.0% 51.6%
4995231 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.72 60.0 4.63e-01 100.0% 48.9%
5026539 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 4.66e-01 100.0% 54.4%
3946755 605.1.1.26 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2058 0.72 60.0 4.30e-01 100.0% 43.5%
3692895 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.71 61.0 3.72e-01 100.0% 17.4%
4012739 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 3.96e-01 100.0% 26.7%
3640260 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.70 57.0 3.55e-01 100.0% 17.6%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.70 55.0 3.55e-01 100.0% 18.5%
3743779 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.70 56.0 3.76e-01 100.0% 23.2%
4971999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.02e-01 100.0% 49.6%
3938245 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.68 54.0 3.46e-01 100.0% 17.3%
4927291 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.67 54.0 4.32e-01 100.0% 42.4%
4944735 101.1.2.542 alpha arrays › HTH › HTH › winged helix domain › ATPase_2 0.66 58.0 4.02e-01 100.0% 37.6%
4025929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.01e-01 100.0% 53.0%
3447043 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 45.0 4.58e-01 75.7% 77.1%
3250067 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.65 54.0 4.08e-01 100.0% 51.0%
5033943 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.64 53.0 4.25e-01 100.0% 57.5%
3280086 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 57.0 3.62e-01 100.0% 30.6%
3920075 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.64 44.0 2.90e-01 100.0% 14.5%
3517061 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.63 53.0 3.38e-01 100.0% 94.4%
5050596 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 34.0 2.75e-01 91.9% 27.1%
3972539 2499.2.1.3 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › T6SS_VipA 0.63 45.0 3.35e-01 81.1% 50.5%
5075144 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.62 47.0 3.85e-01 91.9% 42.7%
3718578 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.62 43.0 2.73e-01 73.0% 15.4%
5058661 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.62 46.0 3.41e-01 97.3% 82.3%
4382858 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 2.88e-01 100.0% 10.2%
3650990 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.61 44.0 3.21e-01 100.0% 24.6%
3713148 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.77e-01 100.0% 46.3%
4214529 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.61 48.0 3.23e-01 100.0% 53.9%
4637532 2003.1.5.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 0.59 42.0 2.61e-01 100.0% 11.2%
4929238 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 50.0 4.08e-01 100.0% 50.7%
4859425 5052.1.1.1 alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.59 47.0 3.45e-01 100.0% 37.5%
3702318 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 41.0 2.60e-01 86.5% 13.0%
3430114 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 44.0 3.80e-01 97.3% 50.8%
3588048 304.156.1.0 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain 0.57 44.0 3.26e-01 89.2% 32.4%
3625937 101.1.2.216 alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.57 40.0 2.94e-01 100.0% 23.3%
3295391 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.56 43.0 2.58e-01 100.0% 45.6%
3174904 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 43.0 2.66e-01 100.0% 18.1%
4968278 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.56 49.0 3.76e-01 100.0% 64.7%
3711992 218.3.1.0 a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 0.56 43.0 3.15e-01 94.6% 40.8%
4508433 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.55 38.0 2.33e-01 100.0% 9.2%
4437448 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.55 46.0 2.86e-01 100.0% 42.1%
4961587 1001.1.1.1 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.54 39.0 3.38e-01 89.2% 45.7%
3785251 101.1.2.124 alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.54 41.0 2.94e-01 100.0% 25.9%
3941746 301.13.1.2 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.54 42.0 2.83e-01 100.0% 54.9%
5047918 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.54 41.0 3.03e-01 100.0% 97.7%
2726885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 42.0 2.98e-01 89.2% 54.0%
4024485 304.116.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.53 36.0 2.65e-01 75.7% 85.8%
5059240 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 38.0 2.89e-01 100.0% 86.9%
3673542 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 41.0 3.58e-01 97.3% 61.5%
3705103 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 38.0 3.04e-01 100.0% 70.5%
3521944 327.11.2.26 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.51 39.0 3.38e-01 97.3% 50.0%
3289119 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.37e-01 94.6% 99.0%
3486876 5048.1.1.7 alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › DUF389 0.51 37.0 2.41e-01 97.3% 56.7%
4234199 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.50 38.0 2.57e-01 100.0% 33.0%