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NC_027399.1__YP_010842990.1__ACQ27_gp106__00106
Bact-VirNC_027399.1__YP_010842990.1__ACQ27_gp106__00106
Identity
- Accession:
- NC_027399 ↗
- Kingdom:
- phage
Quality
72.0
mean pLDDT
Taxonomy
TaxID: 1439894
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-114
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04717.19 best | Phage_base_V | 30.7 | 4.40e-07 | 100.0% | 96.0% |
D2
high
residues 125-221_242-293
Domain cluster:
rep: IMGVR_UViG_3300026212_000090-3300026212-Ga0208409_10005035__D137-224_260-330
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 41.0 | 4.91e-01 | 90.6% | 99.0% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.56 | 33.0 | 3.26e-01 | 85.9% | 53.5% |
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.54 | 35.0 | 3.49e-01 | 97.3% | 62.6% |
| 1hlcA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 27.0 | 2.88e-01 | 93.3% | 53.5% |
| 5d1pA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 26.0 | 3.60e-01 | 83.2% | 98.5% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 25.0 | 2.92e-01 | 94.0% | 57.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4609923 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.62 | 36.0 | 3.81e-01 | 100.0% | 63.0% |
| 3711004 | 77.3.1.1 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C | 0.57 | 34.0 | 3.68e-01 | 85.9% | 68.8% |
| 3471142 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.57 | 33.0 | 3.10e-01 | 85.9% | 45.3% |
| 3717674 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.55 | 29.0 | 3.57e-01 | 89.9% | 81.1% |
| 4797891 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.55 | 25.0 | 3.51e-01 | 87.2% | 91.3% |
| 4948490 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 24.0 | 3.17e-01 | 85.9% | 82.7% |
D3
high
residues 525-632
Domain cluster:
rep: MH494197.1__AXC39327.1__X__00615__D2-82
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01551.30 best | Peptidase_M23 | 29.5 | 9.50e-07 | 72.2% | 75.0% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu1A03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.81 | 77.0 | 7.13e-01 | 100.0% | 87.9% |
| 1qwyA02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.81 | 76.0 | 6.37e-01 | 100.0% | 67.4% |
| 6jn7A01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.80 | 76.0 | 6.28e-01 | 100.0% | 65.7% |
| 3tufB00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.80 | 75.0 | 6.50e-01 | 100.0% | 81.6% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.79 | 75.0 | 6.91e-01 | 100.0% | 86.7% |
| 4bh5A00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.78 | 74.0 | 6.93e-01 | 100.0% | 85.4% |
| 2hsiB02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.77 | 71.0 | 6.31e-01 | 100.0% | 71.2% |
| 4rnyA03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.76 | 73.0 | 6.80e-01 | 100.0% | 88.3% |
| 3it5G00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.73 | 69.0 | 5.69e-01 | 100.0% | 66.7% |
| 5b0hA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.72 | 68.0 | 6.26e-01 | 100.0% | 88.7% |
| 1f3zA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.66 | 60.0 | 5.36e-01 | 100.0% | 92.0% |
| 4fnvA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 51.0 | 3.79e-01 | 95.4% | 51.4% |
| 4mmhA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 50.0 | 3.71e-01 | 93.5% | 50.9% |
| 8siuA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 37.0 | 2.59e-01 | 70.4% | 26.7% |
| 1ee8A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.54 | 43.0 | 4.13e-01 | 92.6% | 75.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.54 | 29.0 | 3.44e-01 | 70.4% | 75.3% |
| 5iqaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 32.0 | 3.45e-01 | 95.4% | 70.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032307 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.83 | 79.0 | 7.11e-01 | 100.0% | 86.4% |
| 5018327 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.82 | 78.0 | 6.46e-01 | 100.0% | 92.0% |
| 3974471 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.82 | 78.0 | 7.16e-01 | 100.0% | 85.2% |
| 3590598 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.82 | 78.0 | 7.19e-01 | 100.0% | 85.7% |
| 3958847 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.82 | 77.0 | 6.35e-01 | 100.0% | 70.0% |
| 3385726 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.82 | 78.0 | 5.96e-01 | 100.0% | 54.1% |
| 2774289 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 77.0 | 6.56e-01 | 100.0% | 71.2% |
| 3966112 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 77.0 | 6.41e-01 | 100.0% | 65.7% |
| None | — | 0.81 | 77.0 | 7.05e-01 | 100.0% | 86.7% | |
| 3387971 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 77.0 | 6.37e-01 | 100.0% | 66.9% |
| 3386468 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 77.0 | 6.49e-01 | 100.0% | 70.9% |
| 4471307 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.80 | 76.0 | 6.80e-01 | 100.0% | 81.2% |
| 2573963 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.80 | 76.0 | 6.15e-01 | 100.0% | 61.8% |
| 3290826 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.80 | 76.0 | 6.46e-01 | 100.0% | 66.5% |
| 216296 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.80 | 75.0 | 6.50e-01 | 100.0% | 81.6% |
| 3279203 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 75.0 | 6.80e-01 | 100.0% | 83.5% |
| 3965283 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 75.0 | 7.16e-01 | 100.0% | 88.6% |
| 3966987 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 74.0 | 6.32e-01 | 100.0% | 79.9% |
| 3388302 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 74.0 | 7.02e-01 | 100.0% | 88.8% |
| 4379172 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 75.0 | 6.91e-01 | 100.0% | 81.2% |
| 5078228 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.78 | 74.0 | 6.35e-01 | 100.0% | 83.1% |
| 3056400 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.78 | 74.0 | 6.88e-01 | 100.0% | 84.7% |
| 1394279 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.78 | 73.0 | 6.27e-01 | 100.0% | 81.4% |
| 2663449 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.77 | 73.0 | 6.77e-01 | 100.0% | 89.2% |
| 5073481 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.77 | 72.0 | 5.56e-01 | 100.0% | 90.5% |
| 3961687 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.77 | 72.0 | 5.65e-01 | 100.0% | 90.4% |
| 4931567 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.76 | 72.0 | 5.81e-01 | 100.0% | 83.2% |
| 4032028 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.76 | 71.0 | 5.87e-01 | 100.0% | 85.0% |
| 4371098 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.75 | 70.0 | 6.71e-01 | 100.0% | 87.5% |
| 3968533 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.75 | 71.0 | 6.23e-01 | 100.0% | 83.3% |
| 1891424 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.75 | 68.0 | 6.54e-01 | 96.3% | 93.4% |
| 3283166 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.74 | 70.0 | 5.08e-01 | 100.0% | 43.0% |
| 4563644 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.74 | 70.0 | 5.76e-01 | 100.0% | 68.0% |
| 4658045 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.74 | 69.0 | 5.46e-01 | 100.0% | 58.9% |
| 119413 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.73 | 69.0 | 5.64e-01 | 100.0% | 65.9% |
| 5072111 | 325.1.6.9 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 | 0.72 | 67.0 | 5.88e-01 | 100.0% | 85.8% |
| 4962739 | 325.1.6.9 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 | 0.71 | 66.0 | 5.71e-01 | 100.0% | 90.6% |
| 5011777 | 325.1.6.9 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 | 0.64 | 59.0 | 4.45e-01 | 100.0% | 46.0% |
| 3320837 | 12.3.1.9 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 | 0.63 | 56.0 | 4.17e-01 | 97.2% | 58.1% |
| 3941423 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.54 | 29.0 | 3.30e-01 | 72.2% | 68.2% |
| 4422963 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.51 | 44.0 | 3.93e-01 | 93.5% | 80.6% |
| 3617288 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.50 | 39.0 | 2.79e-01 | 85.2% | 92.9% |
D4
high
residues 724-842
Domain cluster:
rep: MH494197.1__AXC39328.1__X__00616__D106-214
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00959.25 best | Phage_lysozyme | 33.5 | 6.70e-08 | 85.7% | 60.0% |