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NC_027981.1__YP_009167753.1__APL38_gp46__00046

Bact-Vir

NC_027981.1__YP_009167753.1__APL38_gp46__00046

Identity

Accession:
NC_027981 ↗
Kingdom:
phage

Quality

64.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vhmlvirus› Vibrio_phage_VP585

TaxID: 631719

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-124
PDB
Domain cluster: rep: KX815270.1__APC43915.1__P19250A_0030__00030__D3-57
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.68 51.0 3.89e-01 100.0% 33.3%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.63 49.0 3.31e-01 100.0% 22.4%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.57e-01 100.0% 41.3%
5e7gA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.95e-01 100.0% 60.0%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.33e-01 100.0% 35.5%
3ptyA02 2.60.120.940 Mainly Beta › Sandwich › Jelly Rolls › EmbC, C-terminal domain, subdomain 2 0.54 42.0 3.17e-01 100.0% 30.3%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.53 41.0 3.05e-01 94.6% 91.0%
3cslA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 37.0 2.16e-01 80.4% 30.2%
1vmoA00 2.100.10.20 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Vitelline membrane outer layer protein I (VOMI) 0.52 43.0 3.19e-01 100.0% 44.2%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 37.0 2.37e-01 83.9% 69.0%
1bihA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.29e-01 98.2% 48.1%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 37.0 2.95e-01 100.0% 35.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4091487 1.1.10.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C_rel 0.85 42.0 3.59e-01 71.4% 31.8%
3702718 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.64 41.0 2.77e-01 71.4% 16.5%
4163835 11.1.5.56 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Zona_CL1 0.57 41.0 3.09e-01 98.2% 29.7%
3222823 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 46.0 3.31e-01 100.0% 28.0%
3168220 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 43.0 3.64e-01 100.0% 47.3%
3228872 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 46.0 2.90e-01 96.4% 17.3%
4136831 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.81e-01 100.0% 54.0%
3241831 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.65e-01 100.0% 49.1%
3490032 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.55 45.0 3.65e-01 100.0% 56.1%
3364460 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 43.0 3.35e-01 100.0% 36.6%
3565861 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 30.0 3.08e-01 71.4% 54.5%
5013525 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 39.0 3.12e-01 100.0% 36.8%
3933152 11.1.1.835 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Irg-7 0.53 43.0 3.46e-01 100.0% 45.4%
3609230 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 41.0 3.29e-01 100.0% 42.1%
1888657 11.1.1.204 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4982 0.52 41.0 3.43e-01 100.0% 56.1%
3663413 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.52 42.0 3.22e-01 100.0% 41.9%
3180942 2.1.1.194 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.52 39.0 2.99e-01 87.5% 82.7%
4113044 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.51 40.0 2.68e-01 89.3% 22.8%
3940255 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.51 40.0 2.79e-01 91.1% 91.8%
3959053 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 2.90e-01 92.9% 96.2%
4277454 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.51 40.0 2.89e-01 100.0% 27.0%