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NC_027981.1__YP_009167755.1__APL38_gp48__00048

Bact-Vir

NC_027981.1__YP_009167755.1__APL38_gp48__00048

Identity

Accession:
NC_027981 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vhmlvirus› Vibrio_phage_VP585

TaxID: 631719

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-170
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.84 76.0 6.52e-01 97.9% 95.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 45.0 5.43e-01 70.5% 98.4%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 44.0 4.22e-01 80.0% 60.7%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 5.56e-01 97.9% 100.0%
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.63 55.0 4.20e-01 100.0% 68.6%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 47.0 4.74e-01 94.7% 81.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 39.0 4.66e-01 97.9% 96.8%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 47.0 4.06e-01 94.7% 50.3%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.61 46.0 4.05e-01 81.1% 91.7%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 46.0 4.60e-01 92.6% 78.8%
5fcxA00 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.59 40.0 3.57e-01 74.7% 48.2%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.59 38.0 4.25e-01 70.5% 88.4%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.59 42.0 4.47e-01 75.8% 86.6%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.58 44.0 3.99e-01 81.1% 94.7%
3bniB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 43.0 3.57e-01 80.0% 73.1%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.57 49.0 4.85e-01 97.9% 92.2%
2wmoA01 1.25.40.410 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A 0.57 38.0 3.37e-01 84.2% 47.8%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.57 39.0 3.99e-01 84.2% 73.6%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.57 37.0 3.89e-01 89.5% 73.8%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 38.0 4.10e-01 70.5% 94.9%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 39.0 3.35e-01 71.6% 55.7%
3pasA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 39.0 3.17e-01 74.7% 83.2%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.19e-01 82.1% 85.4%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 37.0 3.05e-01 70.5% 56.8%
7byjA01 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.52 46.0 4.28e-01 100.0% 86.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.51 41.0 3.61e-01 90.5% 92.2%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 4.18e-01 100.0% 86.3%
1s7bA00 1.10.3730.20 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.51 37.0 3.62e-01 81.1% 68.9%
3k66A01 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.51 45.0 3.51e-01 98.9% 95.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979886 3759.1.1.2 ↗ alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Phage_antiter_Q 0.91 84.0 6.93e-01 100.0% 59.4%
3978753 3759.1.1.1 ↗ alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm 0.82 77.0 6.86e-01 100.0% 75.4%
4004617 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.72 47.0 4.44e-01 74.7% 55.7%
3788384 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 61.0 5.86e-01 96.8% 96.3%
4612394 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.67 50.0 5.13e-01 91.6% 84.3%
4967072 5067.1.1.12 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 0.66 58.0 4.77e-01 100.0% 86.5%
3477521 3456.1.1.3 ↗ extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › OPA1_C 0.65 45.0 4.04e-01 70.5% 82.3%
3185992 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 50.0 4.50e-01 93.7% 60.0%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.63 45.0 4.31e-01 88.4% 63.5%
3485769 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.62 51.0 4.12e-01 90.5% 65.1%
4021747 7023.1.1.0 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.62 42.0 3.71e-01 70.5% 66.2%
3402945 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.61 52.0 5.00e-01 97.9% 90.9%
3993316 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.60 43.0 2.99e-01 74.7% 27.4%
3932090 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 42.0 4.55e-01 74.7% 90.0%
1097270 633.19.1.1 ↗ alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 0.59 42.0 4.02e-01 72.6% 79.6%
4977541 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.32e-01 72.6% 50.3%
4952988 1075.1.1.19 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_4 0.59 41.0 3.08e-01 72.6% 43.3%
5006582 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.58 36.0 4.08e-01 74.7% 84.3%
3786690 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 3.78e-01 88.4% 80.9%
5001160 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 52.0 4.67e-01 98.9% 80.0%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.57 37.0 4.10e-01 76.8% 84.0%
3308688 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.57 38.0 4.21e-01 88.4% 86.7%
4544514 101.1.2.71 ↗ alpha arrays › HTH › HTH › winged helix domain › RuvB_C 0.55 45.0 4.52e-01 87.4% 91.6%
3164482 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 42.0 3.29e-01 82.1% 79.3%
3440522 5069.1.3.12 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF6490 0.54 38.0 3.89e-01 73.7% 95.8%
4315549 101.1.2.71 ↗ alpha arrays › HTH › HTH › winged helix domain › RuvB_C 0.54 42.0 4.17e-01 85.3% 80.0%
3390609 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 46.0 3.78e-01 98.9% 78.7%
3456443 2003.1.5.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.52 45.0 3.24e-01 98.9% 86.9%
3581959 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 41.0 3.12e-01 84.2% 80.9%
3561495 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.51 44.0 4.09e-01 95.8% 78.3%
4033873 1075.1.1.10 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_5 0.51 43.0 3.48e-01 93.7% 56.0%
D2 medium residues 1-57_171-189
PDB
Domain cluster: rep: NC_004456.1__NP_758905.1__VHMLp12__00012__D3-63