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NC_027989.1__YP_009168525.1__FDG52_s1gp62__00062
Bact-VirNC_027989.1__YP_009168525.1__FDG52_s1gp62__00062
Identity
- Accession:
- NC_027989 ↗
- Kingdom:
- phage
Quality
66.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Connertonviridae›
Firehammervirus›
Campylobacter_phage_vB_CcoM-IBB_35
TaxID: 2920889
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 84-144
Domain cluster:
rep: MN698243.1__QGZ18022.1__HTVC104P_gp68__00068__D76-124
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s04A00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.71 | 52.0 | 4.31e-01 | 78.7% | 100.0% |
| 7r6yA01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.70 | 48.0 | 4.20e-01 | 72.1% | 89.1% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.69 | 48.0 | 4.24e-01 | 72.1% | 88.6% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.69 | 49.0 | 4.81e-01 | 77.0% | 92.6% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.68 | 46.0 | 4.95e-01 | 78.7% | 86.3% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.67 | 48.0 | 4.13e-01 | 75.4% | 79.8% |
| 2pvzB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.66 | 54.0 | 3.81e-01 | 93.4% | 55.3% |
| 2awnC02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 44.0 | 4.16e-01 | 70.5% | 93.6% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.63 | 46.0 | 3.50e-01 | 77.0% | 69.9% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 44.0 | 3.94e-01 | 77.0% | 93.5% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 45.0 | 3.74e-01 | 80.3% | 50.9% |
| 1x53A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 48.0 | 3.78e-01 | 86.9% | 58.8% |
| 1tm0A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 48.0 | 3.61e-01 | 90.2% | 45.7% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 45.0 | 3.54e-01 | 82.0% | 70.9% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 44.0 | 3.89e-01 | 82.0% | 63.2% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.57 | 39.0 | 4.22e-01 | 72.1% | 100.0% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 40.0 | 2.66e-01 | 75.4% | 60.2% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.54 | 40.0 | 2.92e-01 | 78.7% | 97.7% |
| 6baoA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 3.13e-01 | 83.6% | 81.8% |
| 3g7nB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 2.85e-01 | 90.2% | 39.3% |
| 2uzzA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.52 | 43.0 | 3.09e-01 | 95.1% | 79.1% |
| 2rqaA00 | 2.170.150.30 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain | 0.50 | 38.0 | 3.10e-01 | 88.5% | 75.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.84 | 54.0 | 6.48e-01 | 78.7% | 100.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.76 | 50.0 | 5.63e-01 | 78.7% | 91.1% |
| 3218646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 43.0 | 4.23e-01 | 86.9% | 56.9% |
| 3966281 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.69 | 50.0 | 3.65e-01 | 78.7% | 57.1% |
| 4954732 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.69 | 48.0 | 4.23e-01 | 73.8% | 81.1% |
| 3975132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 51.0 | 4.48e-01 | 80.3% | 63.3% |
| 3300848 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.66 | 42.0 | 3.52e-01 | 86.9% | 37.9% |
| 3266157 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.66 | 53.0 | 3.47e-01 | 88.5% | 53.6% |
| 3395491 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.65 | 48.0 | 3.49e-01 | 78.7% | 87.6% |
| 3616007 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.65 | 47.0 | 4.91e-01 | 83.6% | 85.5% |
| 3408206 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.63 | 47.0 | 3.50e-01 | 80.3% | 52.5% |
| 3941636 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 43.0 | 3.56e-01 | 72.1% | 99.1% |
| 4516678 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.63 | 46.0 | 3.60e-01 | 80.3% | 50.7% |
| 1177793 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.63 | 44.0 | 3.44e-01 | 77.0% | 45.0% |
| 4191690 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.63 | 46.0 | 4.75e-01 | 83.6% | 82.8% |
| 1688248 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 43.0 | 4.02e-01 | 75.4% | 89.9% |
| 1384885 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.60 | 44.0 | 3.98e-01 | 82.0% | 68.2% |
| 169137 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.60 | 45.0 | 3.57e-01 | 83.6% | 52.7% |
| 3929373 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.59 | 44.0 | 4.51e-01 | 82.0% | 83.3% |
| 3564972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 44.0 | 4.28e-01 | 83.6% | 71.4% |
| 3492079 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 42.0 | 3.65e-01 | 77.0% | 51.5% |
| 3874056 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.59 | 43.0 | 4.55e-01 | 82.0% | 87.3% |
| 3749834 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 43.0 | 4.52e-01 | 83.6% | 89.1% |
| 4112414 | 2004.1.1.301 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 | 0.56 | 39.0 | 2.39e-01 | 82.0% | 13.1% |
| 4027162 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.55 | 44.0 | 2.75e-01 | 93.4% | 97.8% |
| 3356654 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.53 | 37.0 | 3.86e-01 | 78.7% | 80.0% |
| 3930641 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 42.0 | 3.61e-01 | 91.8% | 83.8% |
| 3230503 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 39.0 | 2.95e-01 | 91.8% | 45.3% |
| 3961859 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 42.0 | 2.70e-01 | 96.7% | 34.4% |
| 3378005 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 42.0 | 2.73e-01 | 93.4% | 28.3% |
| 3936106 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 39.0 | 2.39e-01 | 86.9% | 66.1% |
D2
medium
residues 145-249_314-357_574-584
Domain cluster:
rep: IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027551__D144-258_324-345
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002641 | 209.1.2.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like | 0.63 | 59.0 | 4.39e-01 | 98.1% | 91.9% |
| 5018422 | 209.1.2.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase | 0.54 | 45.0 | 3.91e-01 | 89.4% | 99.6% |
D3
medium
residues 416-573