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NC_027990.1__YP_009168573.1__APL41_gp43__00043

Bact-Vir

Identity

Accession:: NC_027990 ↗
Kingdom:: phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anamdongvirus› Lactobacillus_phage_LBR48

TaxID: 755164

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2f8lA01	1.10.150.470	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.65	54.0	5.01e-01	96.7%	93.8%
4rocA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.65	49.0	4.14e-01	100.0%	48.5%
3zh9B03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.62	44.0	3.58e-01	100.0%	38.1%
8ctsB01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.61	43.0	3.92e-01	77.0%	79.3%
2l7kA00	1.10.10.1850	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like	0.61	49.0	4.62e-01	98.4%	75.0%
1w36C06	1.10.10.990	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.55	44.0	4.23e-01	100.0%	80.6%
2uyyA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.54	45.0	3.69e-01	100.0%	87.8%
2ewfA02	1.20.1270.310	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	37.0	3.43e-01	73.8%	69.1%
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.53	38.0	3.69e-01	77.0%	75.0%
4fjqA01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.52	40.0	2.57e-01	88.5%	26.0%
2f3nA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.52	37.0	3.71e-01	78.7%	78.5%
3mggA02	6.10.140.1580	Special › Helix non-globular › Helix Hairpins ›	0.51	43.0	3.89e-01	100.0%	87.6%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.51	44.0	3.71e-01	96.7%	76.5%
4issA02	1.20.58.1700	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	42.0	3.91e-01	96.7%	72.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4441062	3962.1.1.3 ↗	alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › YtxK_like	0.67	57.0	5.23e-01	100.0%	96.5%
4000213	3455.1.1.0 ↗	alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors	0.60	42.0	3.06e-01	100.0%	24.3%
4985449	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.59	41.0	3.71e-01	73.8%	76.5%
5073908	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.58	41.0	3.31e-01	75.4%	100.0%
5027346	3718.1.1.0 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT	0.57	49.0	4.80e-01	96.7%	89.2%
4572664	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.54	47.0	4.52e-01	100.0%	97.1%
5058433	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.51	41.0	2.70e-01	91.8%	56.4%