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NC_027990.1__YP_009168585.1__APL41_gp55__00055
Bact-VirNC_027990.1__YP_009168585.1__APL41_gp55__00055
Identity
- Accession:
- NC_027990 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
TaxID: 755164
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-25_39-114
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04466.20 best | Terminase_3 | 72.9 | 3.70e-20 | 91.1% | 36.8% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4idhA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 77.0 | 5.74e-01 | 98.9% | 46.2% |
| 1w5sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 52.0 | 4.10e-01 | 83.3% | 85.8% |
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 38.0 | 3.23e-01 | 84.4% | 34.0% |
| 3jcmN01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 55.0 | 4.09e-01 | 93.3% | 62.9% |
| 1hyeA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 40.0 | 3.38e-01 | 83.3% | 37.4% |
| 6qv4A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 52.0 | 4.05e-01 | 88.9% | 61.9% |
| 3d40A00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.63 | 48.0 | 3.57e-01 | 84.4% | 39.3% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 50.0 | 4.64e-01 | 86.7% | 75.7% |
| 3h1tA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 49.0 | 3.77e-01 | 87.8% | 50.7% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 50.0 | 4.76e-01 | 86.7% | 80.4% |
| 1lw7A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 36.0 | 2.91e-01 | 90.0% | 32.0% |
| 4h0eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.75e-01 | 82.2% | 100.0% |
| 4wzzA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.78e-01 | 83.3% | 58.5% |
| 3k9cA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.87e-01 | 82.2% | 61.0% |
| 4ccdA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 41.0 | 3.39e-01 | 76.7% | 75.6% |
| 2qxlB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 38.0 | 3.36e-01 | 87.8% | 46.3% |
| 3sdbA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 45.0 | 3.47e-01 | 84.4% | 59.7% |
| 1a3cA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 3.65e-01 | 84.4% | 55.4% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.56 | 44.0 | 3.91e-01 | 84.4% | 73.6% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 45.0 | 3.78e-01 | 86.7% | 78.8% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 43.0 | 3.72e-01 | 83.3% | 56.2% |
| 3rotA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 42.0 | 3.68e-01 | 81.1% | 63.5% |
| 2yhwA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 48.0 | 3.95e-01 | 96.7% | 76.2% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 42.0 | 4.11e-01 | 81.1% | 99.0% |
| 2r6oA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 45.0 | 3.31e-01 | 93.3% | 57.0% |
| 1mldA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 45.0 | 3.86e-01 | 91.1% | 60.7% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 3.54e-01 | 87.8% | 47.3% |
| 1qz9A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 43.0 | 3.11e-01 | 88.9% | 38.7% |
| 4b8wB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 3.40e-01 | 92.2% | 55.4% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.53 | 40.0 | 3.31e-01 | 80.0% | 64.6% |
| 1qwoA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.53 | 40.0 | 2.67e-01 | 82.2% | 56.7% |
| 5f1yA02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.53 | 44.0 | 3.51e-01 | 91.1% | 52.8% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 40.0 | 3.84e-01 | 83.3% | 86.1% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 48.0 | 4.51e-01 | 100.0% | 84.3% |
| 1ig3A02 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.52 | 38.0 | 3.28e-01 | 90.0% | 46.9% |
| 3vovA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 44.0 | 3.72e-01 | 94.4% | 75.3% |
| 4f3hA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.52 | 43.0 | 3.20e-01 | 93.3% | 60.7% |
| 3zr5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 41.0 | 2.95e-01 | 91.1% | 51.3% |
| 2vm6A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 40.0 | 3.45e-01 | 84.4% | 54.9% |
| 2j6vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 41.0 | 2.99e-01 | 90.0% | 57.9% |
| 1tt5C01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 36.0 | 2.54e-01 | 81.1% | 21.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4118691 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.91 | 87.0 | 6.12e-01 | 100.0% | 43.4% |
| 4031427 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.88 | 82.0 | 5.92e-01 | 100.0% | 47.0% |
| 3986759 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.87 | 81.0 | 5.93e-01 | 98.9% | 46.0% |
| 3964961 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.85 | 81.0 | 5.93e-01 | 100.0% | 46.2% |
| 1187396 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.83 | 77.0 | 5.56e-01 | 98.9% | 41.4% |
| 5031040 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.82 | 76.0 | 5.54e-01 | 100.0% | 45.2% |
| 4988088 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.82 | 76.0 | 5.48e-01 | 100.0% | 45.5% |
| 4972934 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 76.0 | 5.59e-01 | 100.0% | 48.4% |
| 2755868 | 2004.1.1.102 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase | 0.82 | 75.0 | 5.24e-01 | 100.0% | 45.1% |
| 3942031 | 2004.1.1.102 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase | 0.81 | 74.0 | 4.98e-01 | 100.0% | 40.3% |
| 5081096 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.78 | 71.0 | 5.33e-01 | 100.0% | 47.6% |
| 4954543 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.77 | 70.0 | 5.08e-01 | 100.0% | 44.2% |
| 3327253 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.68 | 53.0 | 4.15e-01 | 84.4% | 69.2% |
| 3654445 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 53.0 | 3.83e-01 | 84.4% | 78.4% |
| 3225963 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.67 | 53.0 | 4.33e-01 | 84.4% | 86.7% |
| 3565104 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 56.0 | 3.26e-01 | 100.0% | 13.2% |
| 4868966 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.64 | 53.0 | 4.40e-01 | 91.1% | 60.1% |
| 3380943 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 54.0 | 3.95e-01 | 93.3% | 63.3% |
| 4030424 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.63 | 55.0 | 4.17e-01 | 100.0% | 48.4% |
| 3698456 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 50.0 | 3.85e-01 | 88.9% | 58.1% |
| 3932575 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.61 | 48.0 | 3.52e-01 | 82.2% | 37.8% |
| 3414018 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 53.0 | 4.12e-01 | 100.0% | 65.2% |
| 3403871 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.60 | 46.0 | 3.52e-01 | 82.2% | 40.5% |
| 3601297 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 47.0 | 3.66e-01 | 88.9% | 57.6% |
| 3517799 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.57 | 45.0 | 3.41e-01 | 83.3% | 40.0% |
| None | — | 0.56 | 49.0 | 3.19e-01 | 96.7% | 34.0% | |
| 3604265 | 3003.1.1.0 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | 0.55 | 43.0 | 4.45e-01 | 83.3% | 89.4% |
| 4440706 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 41.0 | 3.64e-01 | 83.3% | 67.4% |
| 3980075 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.53 | 45.0 | 3.24e-01 | 94.4% | 52.9% |
| 4270392 | 2002.1.1.75 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › QRPTase_C | 0.52 | 39.0 | 3.18e-01 | 80.0% | 94.3% |