Back to structures

NC_027996.1__YP_009169048.1__APL46_gp112__00110

Bact-Vir

NC_027996.1__YP_009169048.1__APL46_gp112__00110

Identity

Accession:
NC_027996 ↗
Kingdom:
phage

Quality

47.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-98
PDB
D2 high residues 328-404
PDB
D3 high residues 447-603
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.70 63.0 6.18e-01 99.4% 90.3%
1ej6A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 41.0 5.11e-01 95.5% 95.8%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 38.0 4.73e-01 95.5% 90.5%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 38.0 4.79e-01 94.9% 93.5%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 39.0 4.77e-01 98.1% 91.0%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.66 40.0 4.63e-01 91.7% 81.2%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 40.0 4.79e-01 98.1% 92.1%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.65 38.0 4.65e-01 95.5% 92.6%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.65 38.0 3.90e-01 89.8% 58.9%
3es6B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 42.0 4.79e-01 96.8% 88.1%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 43.0 4.91e-01 96.2% 91.5%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 35.0 4.44e-01 96.8% 93.3%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 41.0 4.89e-01 96.2% 100.0%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 4.81e-01 96.8% 92.2%
2x10A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 37.0 4.44e-01 96.2% 90.1%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.62 41.0 4.26e-01 97.5% 70.7%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 36.0 4.41e-01 96.8% 90.8%
2vzsA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 4.76e-01 96.8% 90.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 40.0 4.66e-01 94.9% 93.6%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 49.0 4.91e-01 89.8% 85.9%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 4.49e-01 91.7% 95.1%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.61e-01 98.1% 91.7%
3v98B01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 41.0 4.55e-01 95.5% 94.0%
1dglA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 4.09e-01 84.1% 66.2%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 33.0 3.61e-01 84.7% 66.7%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 4.45e-01 96.2% 93.7%
4ypjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.52e-01 96.8% 92.4%
1m1sA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 4.32e-01 96.2% 91.7%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 32.0 4.13e-01 94.3% 91.6%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 33.0 4.01e-01 96.2% 88.9%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 32.0 4.00e-01 70.7% 95.4%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 4.25e-01 75.8% 95.4%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.56 36.0 3.78e-01 98.1% 69.4%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 4.26e-01 97.5% 92.2%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.56 35.0 4.18e-01 72.0% 94.3%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.69e-01 75.8% 77.0%
3gneB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.59e-01 76.4% 100.0%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.55 41.0 3.86e-01 76.4% 80.5%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.85e-01 73.9% 73.7%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.67e-01 89.8% 99.4%
4aq1A04 2.60.40.3450 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 4.20e-01 97.5% 89.8%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.54 26.0 3.52e-01 86.6% 85.7%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 3.98e-01 75.2% 97.5%
5l73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.97e-01 79.0% 98.9%
4mbrA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.44e-01 89.2% 90.4%
6oauA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 39.0 4.35e-01 95.5% 99.2%
4nreA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 39.0 4.37e-01 96.2% 100.0%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.80e-01 98.1% 59.5%
1ju3A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.47e-01 75.2% 100.0%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.98e-01 90.4% 84.3%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 4.27e-01 91.7% 93.8%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.52 39.0 4.29e-01 97.5% 96.8%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 4.01e-01 97.5% 85.4%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.98e-01 79.6% 98.1%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.91e-01 78.3% 98.2%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.84e-01 72.6% 82.4%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 37.0 3.49e-01 73.9% 96.3%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.94e-01 97.5% 72.8%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.51 42.0 4.44e-01 96.8% 98.6%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 3.13e-01 76.4% 45.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3608293 10.37.1.0 beta sandwiches › jelly-roll › TerD › TerD 0.76 72.0 6.43e-01 100.0% 81.9%
3719283 10.37.1.1 beta sandwiches › jelly-roll › TerD › TerD › TerD 0.73 68.0 6.31e-01 99.4% 89.7%
3592284 10.37.1.0 beta sandwiches › jelly-roll › TerD › TerD 0.71 67.0 6.37e-01 100.0% 88.3%
5038684 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 39.0 4.57e-01 92.4% 78.2%
4212121 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 50.0 5.61e-01 96.8% 99.2%
3487100 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 41.0 4.44e-01 97.5% 73.1%
3268650 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 43.0 4.55e-01 97.5% 74.3%
5036727 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.65 40.0 2.92e-01 96.8% 23.5%
5060619 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.65 43.0 5.03e-01 94.3% 95.5%
4932670 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 38.0 4.70e-01 75.2% 95.8%
4019681 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 36.0 3.81e-01 93.0% 61.4%
3416828 10.32.1.188 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM181_GOLD 0.62 44.0 4.60e-01 75.8% 78.6%
4938062 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 39.0 4.55e-01 94.9% 89.1%
5082908 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 34.0 3.94e-01 73.2% 74.1%
3593524 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 45.0 4.15e-01 75.8% 62.4%
4955347 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 39.0 4.56e-01 74.5% 93.3%
3661818 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 37.0 4.33e-01 75.8% 85.5%
4177785 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.60 35.0 4.07e-01 75.8% 80.9%
3474757 10.32.1.188 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM181_GOLD 0.59 43.0 4.37e-01 75.8% 86.9%
3716837 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 40.0 4.35e-01 75.2% 82.3%
5030450 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 42.0 4.44e-01 73.9% 82.8%
3239601 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 38.0 4.26e-01 97.5% 82.4%
3255205 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 36.0 4.14e-01 96.8% 82.6%
3241410 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.58 40.0 4.64e-01 98.7% 100.0%
330281 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.58 46.0 4.03e-01 84.1% 66.0%
3837684 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.58 43.0 3.77e-01 78.3% 73.8%
3742116 10.32.1.72 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.57 40.0 4.62e-01 75.8% 99.1%
3605972 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 38.0 4.46e-01 96.8% 98.2%
3932049 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 41.0 3.98e-01 75.8% 72.0%
3865855 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.55 41.0 4.04e-01 76.4% 99.4%
3207675 11.2.1.32 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK_N 0.55 41.0 3.77e-01 76.4% 92.2%
3827637 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.55 36.0 3.16e-01 97.5% 42.4%
3221888 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.55 40.0 4.50e-01 87.3% 96.7%
4930609 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 43.0 4.57e-01 97.5% 91.4%
3910447 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 39.0 4.22e-01 82.8% 86.9%
3591997 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 4.10e-01 75.2% 84.6%
3998968 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 37.0 3.82e-01 77.7% 73.8%
5038652 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 35.0 4.16e-01 96.8% 98.1%
5084049 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 39.0 4.34e-01 97.5% 94.4%
4631095 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 4.63e-01 100.0% 92.0%
5050088 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 48.0 4.35e-01 94.9% 72.7%
3990817 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 39.0 3.77e-01 74.5% 70.9%
3593967 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 35.0 4.00e-01 98.1% 87.5%
3413120 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.53 39.0 3.54e-01 76.4% 73.0%
3628368 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.53 40.0 4.35e-01 96.8% 100.0%
3228180 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.53 39.0 4.29e-01 96.2% 99.2%
1790188 11.1.1.184 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.53 42.0 4.11e-01 97.5% 78.0%
4076905 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 38.0 3.75e-01 73.9% 98.8%
3489211 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 37.0 4.14e-01 75.2% 95.0%
3894765 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.52 39.0 4.22e-01 94.3% 96.2%
3830721 207.1.1.43 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.52 38.0 2.68e-01 75.2% 24.4%
3320260 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 38.0 2.74e-01 75.8% 28.6%
3916271 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 39.0 3.69e-01 78.3% 90.3%
5046043 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 41.0 4.36e-01 97.5% 97.0%
3832080 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 38.0 2.59e-01 76.4% 21.5%
3341432 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.51 39.0 4.04e-01 86.0% 85.5%
3824997 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 37.0 2.56e-01 75.8% 21.9%
3810286 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.51 37.0 3.51e-01 76.4% 65.6%
3392961 10.2.1.31 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.50 36.0 4.01e-01 97.5% 95.0%
4255542 10.32.1.216 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.50 37.0 3.68e-01 76.4% 100.0%
4426314 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 36.0 3.79e-01 75.2% 93.1%
D4 high residues 639-698
PDB
D5 medium residues 163-316
PDB