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YP_009177778.1
Arc-VirNC_028268__YP_009177778.1__ASQ66-gp48__00048
Identity
- Accession:
- NC_028268 ↗
- Protein ID:
- YP_009177778.1 ↗
- Kingdom:
- archaea
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01402.28 best | RHH_1 | 30.2 | 4.30e-07 | 76.0% | 87.8% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bsqE01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.88 | 59.0 | 5.97e-01 | 70.0% | 70.0% |
| 1bazC00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.83 | 67.0 | 6.96e-01 | 86.0% | 93.5% |
| 3qoqC00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.81 | 63.0 | 6.39e-01 | 84.0% | 85.7% |
| 2an7A00 | 6.10.180.10 | Special › Helix non-globular › Arc Repressor Mutant › Antitoxin ParD | 0.73 | 53.0 | 4.49e-01 | 84.0% | 47.0% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.72 | 62.0 | 4.98e-01 | 96.0% | 80.2% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.62 | 43.0 | 3.61e-01 | 76.0% | 41.1% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.61 | 45.0 | 3.53e-01 | 80.0% | 92.1% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 38.0 | 3.72e-01 | 70.0% | 77.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980496 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.89 | 66.0 | 4.54e-01 | 78.0% | 26.0% |
| 3504504 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.89 | 60.0 | 6.86e-01 | 70.0% | 100.0% |
| 4980865 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.88 | 67.0 | 5.60e-01 | 80.0% | 51.2% |
| 2832012 | 101.1.11.30 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH | 0.87 | 69.0 | 7.27e-01 | 84.0% | 97.7% |
| 3951746 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.86 | 71.0 | 6.14e-01 | 88.0% | 61.6% |
| 3291144 | 101.1.11.41 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF6364 | 0.85 | 63.0 | 5.40e-01 | 80.0% | 50.6% |
| 5045263 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.82 | 70.0 | 5.93e-01 | 94.0% | 86.3% |
| 4968134 | 101.1.11.41 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF6364 | 0.82 | 69.0 | 6.69e-01 | 92.0% | 87.3% |
| 4058428 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.81 | 59.0 | 5.78e-01 | 82.0% | 70.9% |
| 3985544 | 101.1.11.65 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RepB-RCR_reg | 0.80 | 58.0 | 5.66e-01 | 78.0% | 70.9% |
| 162036 | 101.1.11.28 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › NikA-like | 0.79 | 55.0 | 5.53e-01 | 74.0% | 72.5% |
| 4970117 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.79 | 61.0 | 5.00e-01 | 86.0% | 46.7% |
| 1167933 | 101.1.11.5 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › Arc | 0.78 | 61.0 | 5.78e-01 | 86.0% | 71.7% |
| 5061394 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.75 | 65.0 | 6.29e-01 | 94.0% | 96.4% |
| 5029686 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.75 | 55.0 | 4.86e-01 | 80.0% | 54.7% |
| 5033202 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.75 | 69.0 | 5.56e-01 | 100.0% | 55.6% |
| 4946062 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.73 | 57.0 | 5.70e-01 | 84.0% | 84.0% |
| 3586991 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.73 | 54.0 | 4.82e-01 | 84.0% | 54.7% |
| 5011906 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.72 | 50.0 | 4.93e-01 | 74.0% | 67.3% |
| 3973493 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.72 | 53.0 | 4.96e-01 | 82.0% | 63.1% |
| 4955033 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.72 | 56.0 | 5.29e-01 | 86.0% | 71.7% |
| 3286839 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.71 | 54.0 | 4.92e-01 | 92.0% | 61.4% |
| 4994233 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.69 | 56.0 | 4.85e-01 | 94.0% | 57.5% |
| 5012232 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.69 | 52.0 | 5.08e-01 | 92.0% | 78.2% |
| 5050855 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.69 | 58.0 | 5.63e-01 | 100.0% | 87.3% |
| 5069760 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.68 | 60.0 | 5.70e-01 | 100.0% | 90.0% |
| 4946063 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.68 | 58.0 | 5.67e-01 | 96.0% | 87.3% |
| 2625223 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.67 | 51.0 | 5.00e-01 | 88.0% | 76.4% |
| 5072014 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.65 | 52.0 | 4.66e-01 | 100.0% | 61.3% |
| 3807164 | 101.1.11.3 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP | 0.63 | 51.0 | 5.01e-01 | 98.0% | 87.3% |
| 4969568 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.58 | 46.0 | 2.86e-01 | 90.0% | 60.6% |
| 2777770 | 612.1.1.1 ↗ | alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_p17 | 0.55 | 44.0 | 3.60e-01 | 98.0% | 54.5% |