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NC_028671.2__YP_009188838.1__AU086_gp05__00005

Bact-Vir

NC_028671.2__YP_009188838.1__AU086_gp05__00005

Identity

Accession:
NC_028671 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_vB_EfaS_IME197

TaxID: 1747326

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-88
PDB
Domain cluster: rep: NC_015262.1__YP_004306159.1__phiCD6356_58__00058__D7-89
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.77 45.0 3.70e-01 77.6% 34.0%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 46.0 3.67e-01 76.5% 33.6%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 33.0 4.25e-01 87.1% 97.8%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 32.0 3.65e-01 78.8% 75.0%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 35.0 3.46e-01 100.0% 61.4%
1bprA00 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.54 38.0 3.14e-01 76.5% 51.4%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 43.0 3.07e-01 89.4% 86.5%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 43.0 2.75e-01 90.6% 72.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.14e-01 72.9% 64.0%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.53 29.0 3.76e-01 80.0% 97.9%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.52 30.0 3.57e-01 84.7% 92.2%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 30.0 2.95e-01 98.8% 50.0%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 33.0 3.11e-01 76.5% 52.8%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.50 39.0 3.40e-01 83.5% 56.1%
3i8bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 2.77e-01 84.7% 84.0%
2hw6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 32.0 3.20e-01 98.8% 61.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4452122 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.70 36.0 3.18e-01 97.6% 33.3%
3658860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 40.0 2.92e-01 77.6% 21.4%
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.65 43.0 4.16e-01 84.7% 60.0%
4992543 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 38.0 4.46e-01 96.5% 90.9%
3715664 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 40.0 3.50e-01 85.9% 42.3%
3615642 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.61 33.0 3.73e-01 70.6% 67.7%
3829068 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.56 32.0 2.39e-01 88.2% 20.4%
3739782 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.56 33.0 2.77e-01 85.9% 31.0%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 27.0 3.24e-01 82.4% 70.9%
3845291 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.54 35.0 2.55e-01 71.8% 23.8%
3303863 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 36.0 2.42e-01 70.6% 35.4%
4070998 601.18.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.52 49.0 3.67e-01 100.0% 50.0%
4957969 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 40.0 3.36e-01 95.3% 46.5%
3607102 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 37.0 2.31e-01 77.6% 42.2%
3826919 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 37.0 2.39e-01 77.6% 23.1%
3167073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 38.0 3.08e-01 80.0% 65.0%