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NC_028672.1__YP_009188937.1__ADU18_0073__00070
Bact-VirNC_028672.1__YP_009188937.1__ADU18_0073__00070
Identity
- Accession:
- NC_028672 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
TaxID: 1684115
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.80 | 62.0 | 4.97e-01 | 83.6% | 48.7% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.77 | 59.0 | 4.77e-01 | 100.0% | 43.3% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.76 | 64.0 | 4.93e-01 | 95.1% | 92.8% |
| 3oduB01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.73 | 60.0 | 3.92e-01 | 91.8% | 35.4% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 66.0 | 5.34e-01 | 100.0% | 96.3% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 53.0 | 5.21e-01 | 82.0% | 93.8% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 48.0 | 4.76e-01 | 88.5% | 69.7% |
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.68 | 48.0 | 4.64e-01 | 73.8% | 94.0% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 51.0 | 4.83e-01 | 78.7% | 71.4% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.66 | 50.0 | 4.19e-01 | 93.4% | 46.3% |
| 3w8hB00 | 1.10.12.70 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.64 | 43.0 | 4.21e-01 | 80.3% | 63.6% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 51.0 | 4.12e-01 | 91.8% | 45.3% |
| 2p7vA00 | 1.20.120.1370 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 | 0.64 | 50.0 | 3.84e-01 | 100.0% | 35.8% |
| 2iexA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.62 | 42.0 | 4.54e-01 | 72.1% | 84.3% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 46.0 | 3.53e-01 | 88.5% | 61.8% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.59 | 44.0 | 3.97e-01 | 80.3% | 78.8% |
| 3plnA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 49.0 | 3.74e-01 | 98.4% | 65.6% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.56 | 30.0 | 3.46e-01 | 70.5% | 71.7% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.54 | 40.0 | 3.47e-01 | 82.0% | 87.1% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.52 | 38.0 | 3.40e-01 | 93.4% | 55.2% |
| 3draA00 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.52 | 40.0 | 2.59e-01 | 85.2% | 35.4% |
| 2hzdA00 | 6.10.20.40 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain | 0.51 | 40.0 | 3.65e-01 | 98.4% | 64.6% |
| 4b7hA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.51 | 37.0 | 3.08e-01 | 78.7% | 73.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593009 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.78 | 61.0 | 5.58e-01 | 85.2% | 80.0% |
| 3992612 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.77 | 52.0 | 4.54e-01 | 70.5% | 48.9% |
| 3597496 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.74 | 61.0 | 4.31e-01 | 100.0% | 30.3% |
| 3526234 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.72 | 58.0 | 3.50e-01 | 85.2% | 40.8% |
| 4507296 | 5055.1.1.7 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › TADA2A-like_3rd | 0.72 | 55.0 | 5.07e-01 | 83.6% | 71.2% |
| 3530636 | 192.29.1.103 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TADA2A-like_3rd | 0.72 | 54.0 | 4.89e-01 | 82.0% | 67.1% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.70 | 52.0 | 5.14e-01 | 93.4% | 75.4% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.67 | 53.0 | 4.64e-01 | 100.0% | 56.8% |
| 2474881 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.66 | 46.0 | 5.02e-01 | 82.0% | 95.7% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.64 | 54.0 | 5.07e-01 | 100.0% | 76.0% |
| 4881805 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.64 | 50.0 | 4.64e-01 | 100.0% | 67.9% |
| 4889303 | 10.13.1.3 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › PhoLip_ATPase_N | 0.64 | 50.0 | 3.38e-01 | 100.0% | 21.3% |
| 3374464 | 274.1.1.45 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › PAP_fibrillin | 0.63 | 42.0 | 3.20e-01 | 82.0% | 28.3% |
| 2756960 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.62 | 56.0 | 4.23e-01 | 100.0% | 89.4% |
| 3887763 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 42.0 | 3.02e-01 | 82.0% | 72.7% |
| 3711095 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.57 | 46.0 | 4.30e-01 | 86.9% | 80.0% |
| 3934503 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.52 | 38.0 | 4.04e-01 | 85.2% | 100.0% |