←Back to structures
NC_028672.1__YP_009189021.1__ADU18_0160__00154
Bact-VirNC_028672.1__YP_009189021.1__ADU18_0160__00154
Identity
- Accession:
- NC_028672 ↗
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Taxonomy
TaxID: 1684115
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-79
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.82 | 48.0 | 2.86e-01 | 96.0% | 9.5% |
| 3msyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.81 | 37.0 | 3.17e-01 | 70.7% | 29.7% |
| 3iayA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 38.0 | 3.55e-01 | 70.7% | 46.9% |
| 3deeA02 | 3.90.930.50 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.60 | 25.0 | 2.21e-01 | 92.0% | 22.8% |
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 44.0 | 2.80e-01 | 89.3% | 73.6% |
| 5vawA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.55 | 37.0 | 3.21e-01 | 90.7% | 45.7% |
| 3iibA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 43.0 | 2.93e-01 | 89.3% | 58.2% |
| 4h5uA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.53 | 39.0 | 2.62e-01 | 78.7% | 35.3% |
| 4mx8C01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 36.0 | 2.69e-01 | 82.7% | 28.6% |
| 4gouA02 | 2.30.29.200 | Mainly Beta › Roll › PH-domain like › | 0.52 | 35.0 | 2.79e-01 | 70.7% | 34.2% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 35.0 | 2.82e-01 | 72.0% | 83.9% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 36.0 | 2.84e-01 | 77.3% | 69.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972938 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.71 | 50.0 | 3.03e-01 | 73.3% | 64.3% |
| 3939936 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 47.0 | 3.37e-01 | 80.0% | 26.7% |
| 3696407 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.65 | 47.0 | 3.22e-01 | 100.0% | 23.8% |
| 3800763 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.65 | 48.0 | 3.20e-01 | 77.3% | 84.0% |
| 3943722 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.63 | 50.0 | 3.08e-01 | 85.3% | 55.3% |
| 4461893 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.62 | 54.0 | 3.26e-01 | 100.0% | 38.5% |
| 4963974 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.60 | 50.0 | 3.26e-01 | 93.3% | 34.9% |
| 3241140 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.59 | 51.0 | 2.93e-01 | 92.0% | 16.6% |
| 5059308 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.58 | 44.0 | 3.04e-01 | 80.0% | 75.5% |
| 3388343 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.58 | 44.0 | 2.80e-01 | 84.0% | 56.2% |
| 4980001 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 42.0 | 3.72e-01 | 80.0% | 53.9% |
| 3902810 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.55 | 39.0 | 3.31e-01 | 81.3% | 44.0% |
| 3705696 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.55 | 38.0 | 2.71e-01 | 72.0% | 23.5% |
| 4978710 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.55 | 37.0 | 3.55e-01 | 76.0% | 61.2% |
| 5082381 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.55 | 49.0 | 3.03e-01 | 100.0% | 66.8% |
| 5010892 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.53 | 36.0 | 3.28e-01 | 77.3% | 50.5% |
| 4979212 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.53 | 43.0 | 2.92e-01 | 92.0% | 65.7% |
| 4464658 | 274.1.1.59 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG | 0.51 | 48.0 | 4.09e-01 | 98.7% | 79.8% |
| 3434074 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.51 | 38.0 | 3.07e-01 | 81.3% | 65.5% |
| 3407706 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.51 | 42.0 | 2.66e-01 | 90.7% | 32.8% |
| 3391707 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.51 | 42.0 | 2.41e-01 | 90.7% | 16.8% |
| 4461398 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.51 | 45.0 | 2.77e-01 | 100.0% | 54.2% |
| 3517374 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.50 | 37.0 | 2.60e-01 | 78.7% | 65.9% |