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NC_028672.1__YP_009189047.1__ADU18_0187__00180

Bact-Vir

NC_028672.1__YP_009189047.1__ADU18_0187__00180

Identity

Accession:
NC_028672 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_PBES_02

TaxID: 1684115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-109
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.71 41.0 4.01e-01 89.9% 52.9%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.68 48.0 4.27e-01 75.2% 51.6%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.66 38.0 4.19e-01 87.2% 67.8%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 40.0 3.27e-01 82.6% 33.2%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.64 38.0 4.06e-01 74.3% 67.4%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 45.0 3.42e-01 74.3% 91.4%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.63 34.0 3.46e-01 76.1% 50.9%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 34.0 3.51e-01 92.7% 55.7%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.59 35.0 2.94e-01 79.8% 33.0%
4bwcA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.59 31.0 3.04e-01 77.1% 45.3%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 4.45e-01 90.8% 81.4%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 36.0 4.19e-01 85.3% 88.3%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 36.0 3.61e-01 84.4% 66.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 32.0 3.40e-01 71.6% 66.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.51 38.0 3.55e-01 84.4% 63.9%
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.50 33.0 3.48e-01 86.2% 72.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4217669 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.75 55.0 4.15e-01 78.0% 34.2%
5047042 6155.1.1.24 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2085 0.67 41.0 3.99e-01 95.4% 54.2%
4623986 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.66 47.0 3.62e-01 78.0% 32.8%
4996138 5069.1.3.136 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MS_channel_1st 0.65 44.0 4.08e-01 75.2% 54.8%
3398929 5041.1.1.32 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 0.65 47.0 5.09e-01 76.1% 91.1%
3596560 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.64 53.0 5.15e-01 89.9% 83.2%
3269062 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.63 49.0 3.49e-01 87.2% 27.4%
3665480 109.4.1.1559 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 0.62 49.0 3.67e-01 86.2% 76.8%
4964044 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.62 49.0 5.12e-01 84.4% 95.0%
4669918 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.61 45.0 3.45e-01 80.7% 32.4%
3706386 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.61 35.0 3.46e-01 84.4% 50.0%
3598977 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 41.0 4.56e-01 81.7% 89.4%
4939889 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.61 46.0 4.49e-01 80.7% 73.3%
3940867 632.22.1.67 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 0.61 40.0 4.29e-01 77.1% 77.9%
4964442 2003.1.1.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.60 46.0 3.52e-01 81.7% 34.6%
4227843 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.60 44.0 4.63e-01 78.9% 90.0%
3492550 188.1.1.0 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.58 46.0 3.43e-01 91.7% 31.5%
5005807 2003.1.1.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.58 44.0 3.37e-01 80.7% 33.2%
4366841 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.58 47.0 3.38e-01 91.7% 36.3%
3732045 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 48.0 3.68e-01 94.5% 78.8%
5035200 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.56 36.0 4.10e-01 81.7% 93.3%
3228773 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 43.0 3.93e-01 83.5% 79.3%
3199801 5001.1.1.144 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Choline_transpo 0.52 41.0 2.80e-01 85.3% 41.7%
3945729 604.32.1.0 ↗ alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.50 42.0 4.01e-01 92.7% 78.5%