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NC_028672.1__YP_009189061.1__ADU18_0202__00194

Bact-Vir

NC_028672.1__YP_009189061.1__ADU18_0202__00194

Identity

Accession:
NC_028672 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_PBES_02

TaxID: 1684115

Cluster

View cluster (56 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-70
PDB
Domain cluster: rep: OP617743.1__UYL04672.1__EBOKLHFM_00052__00052__D7-66
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 61.0 6.29e-01 100.0% 80.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 63.0 6.83e-01 100.0% 94.3%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.57e-01 100.0% 89.5%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 55.0 5.60e-01 100.0% 73.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 61.0 6.57e-01 100.0% 98.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 65.0 6.14e-01 100.0% 76.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 65.0 6.54e-01 100.0% 92.2%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 61.0 5.18e-01 100.0% 55.1%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 5.34e-01 100.0% 69.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 63.0 6.23e-01 100.0% 89.4%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 62.0 6.29e-01 100.0% 93.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 6.22e-01 100.0% 94.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 6.24e-01 100.0% 96.6%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 57.0 5.71e-01 100.0% 83.1%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 6.08e-01 100.0% 93.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.84e-01 100.0% 90.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 59.0 6.15e-01 100.0% 98.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.34e-01 100.0% 71.1%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.18e-01 100.0% 66.3%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.93e-01 100.0% 91.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.58e-01 100.0% 81.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.80e-01 100.0% 91.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.43e-01 100.0% 83.3%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.23e-01 100.0% 80.7%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.39e-01 93.7% 95.5%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 56.0 5.62e-01 100.0% 98.4%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 4.03e-01 100.0% 59.1%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.39e-01 95.2% 65.6%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.60 47.0 3.28e-01 87.3% 77.0%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 50.0 3.91e-01 100.0% 51.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.21e-01 96.8% 81.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 44.0 3.00e-01 87.3% 92.2%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 3.93e-01 100.0% 85.3%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.55 44.0 3.16e-01 93.7% 81.4%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 48.0 3.05e-01 96.8% 28.7%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 40.0 2.74e-01 85.7% 32.9%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 2.89e-01 81.0% 30.9%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.60e-01 90.5% 64.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 39.0 4.03e-01 98.4% 86.4%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 42.0 3.60e-01 95.2% 86.1%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 39.0 3.29e-01 90.5% 93.5%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 41.0 3.10e-01 100.0% 66.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.91 67.0 6.22e-01 100.0% 64.0%
2106277 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.83 59.0 4.65e-01 100.0% 37.9%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 57.0 5.26e-01 100.0% 57.5%
3706998 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 57.0 5.82e-01 100.0% 76.7%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 4.56e-01 100.0% 31.8%
3955235 4.1.1.183 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4926 0.78 63.0 5.83e-01 100.0% 68.8%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 65.0 6.53e-01 100.0% 90.5%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 63.0 6.14e-01 100.0% 80.0%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 62.0 6.23e-01 100.0% 85.9%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 64.0 6.08e-01 100.0% 78.7%
3210707 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 64.0 6.55e-01 100.0% 98.3%
157526 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 63.0 6.34e-01 100.0% 93.7%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.74 63.0 6.29e-01 100.0% 89.2%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 63.0 5.55e-01 100.0% 65.6%
3566631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 63.0 5.81e-01 100.0% 73.8%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.91e-01 100.0% 81.4%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 62.0 5.77e-01 100.0% 73.8%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 6.22e-01 100.0% 90.8%
3227565 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 60.0 6.20e-01 96.8% 95.0%
3999846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 62.0 5.85e-01 100.0% 78.7%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 62.0 5.85e-01 100.0% 78.7%
3257276 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 63.0 5.00e-01 100.0% 48.0%
3581631 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 61.0 6.10e-01 100.0% 90.8%
3743464 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 63.0 5.93e-01 100.0% 81.3%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 63.0 5.94e-01 100.0% 81.3%
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 64.0 6.09e-01 100.0% 93.3%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 62.0 5.87e-01 100.0% 81.3%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.71 63.0 5.61e-01 100.0% 72.2%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 64.0 6.02e-01 100.0% 86.7%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.99e-01 100.0% 87.1%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 60.0 6.02e-01 100.0% 93.8%
3607307 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 61.0 5.93e-01 100.0% 87.1%
3475429 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 6.09e-01 100.0% 92.9%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 61.0 6.04e-01 100.0% 93.8%
3498157 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 61.0 5.16e-01 100.0% 81.9%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.69 58.0 5.58e-01 100.0% 81.1%
3575253 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 57.0 5.52e-01 95.2% 84.3%
3631186 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.68 56.0 5.38e-01 100.0% 80.0%
3174580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.43e-01 100.0% 74.1%
4963580 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 58.0 5.40e-01 100.0% 81.2%
3232165 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 57.0 5.12e-01 100.0% 98.9%
3585016 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 45.0 4.64e-01 73.0% 95.0%
515 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 5.01e-01 100.0% 98.9%
5063688 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 56.0 5.06e-01 100.0% 70.8%
3214006 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 4.46e-01 100.0% 73.8%
3482860 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 53.0 4.81e-01 95.2% 76.7%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.64e-01 100.0% 98.5%
5020812 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.14e-01 100.0% 81.3%
5000593 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 55.0 5.29e-01 100.0% 84.0%
353902 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 56.0 5.27e-01 100.0% 81.8%
3890642 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.28e-01 98.4% 84.3%
4594253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 54.0 5.25e-01 95.2% 91.4%
3482288 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.31e-01 100.0% 82.3%
3549597 4.1.1.77 ↗ beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.63 55.0 4.40e-01 100.0% 67.7%
4001976 4.1.1.77 ↗ beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.63 53.0 4.54e-01 95.2% 60.0%
3555993 4.1.1.77 ↗ beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.63 52.0 4.32e-01 95.2% 52.5%
1412393 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 55.0 5.17e-01 98.4% 85.5%
3940829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.38e-01 95.2% 57.3%
5078626 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 53.0 5.08e-01 100.0% 86.5%
25850 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.53e-01 95.2% 67.0%
4086268 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 4.06e-01 93.7% 60.0%
3439990 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 44.0 4.02e-01 90.5% 74.4%
3785954 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.53 41.0 2.54e-01 84.1% 34.5%
3171037 5.1.4.378 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF27702 0.53 44.0 2.73e-01 93.7% 19.7%
3221928 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 37.0 2.47e-01 93.7% 17.5%
3471722 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 44.0 3.66e-01 95.2% 52.2%
3269464 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 43.0 3.65e-01 95.2% 55.5%
3520418 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.52 40.0 3.22e-01 90.5% 90.0%
4004717 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.52 36.0 3.13e-01 100.0% 42.7%