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NC_028672.1__YP_009189072.1__ADU18_0213__00205
Bact-VirNC_028672.1__YP_009189072.1__ADU18_0213__00205
Identity
- Accession:
- NC_028672 ↗
- Kingdom:
- phage
Quality
70.4
mean pLDDT
Taxonomy
TaxID: 1684115
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kw3B01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.68 | 60.0 | 4.52e-01 | 100.0% | 42.4% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 54.0 | 4.08e-01 | 100.0% | 39.6% |
| 4hc5D00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 51.0 | 3.87e-01 | 100.0% | 38.2% |
| 4pavB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 52.0 | 3.94e-01 | 100.0% | 39.7% |
| 3ey7A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 52.0 | 4.05e-01 | 100.0% | 44.6% |
| 2p62A01 | 3.40.50.10620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains | 0.60 | 52.0 | 3.86e-01 | 100.0% | 41.2% |
| 1tsjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 50.0 | 4.01e-01 | 100.0% | 91.5% |
| 3bqxA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 49.0 | 3.75e-01 | 100.0% | 38.1% |
| 1u6lA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 46.0 | 3.67e-01 | 100.0% | 41.3% |
| 1ivyB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 44.0 | 2.70e-01 | 94.5% | 55.8% |
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 44.0 | 2.87e-01 | 100.0% | 17.9% |
| 2qqzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 42.0 | 3.51e-01 | 100.0% | 44.3% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 46.0 | 3.79e-01 | 100.0% | 50.0% |
| 3wz2B00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.54 | 43.0 | 2.94e-01 | 90.9% | 76.8% |
| 5dn8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 3.00e-01 | 100.0% | 28.8% |
| 1ybfA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 42.0 | 2.88e-01 | 90.9% | 85.4% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 42.0 | 3.15e-01 | 89.1% | 61.8% |
| 6u8yK01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.54 | 47.0 | 3.42e-01 | 100.0% | 37.7% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 44.0 | 3.60e-01 | 100.0% | 47.7% |
| 2dawA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 41.0 | 3.20e-01 | 90.9% | 52.6% |
| 4az3B00 | 3.40.50.12670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 3.25e-01 | 100.0% | 39.4% |
| 7r0kB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 2.93e-01 | 100.0% | 23.4% |
| 1u7iA01 | 3.30.720.100 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 42.0 | 4.10e-01 | 98.2% | 87.9% |
| 1ei6A02 | 3.30.1360.110 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain 2, Phosphonoacetate Hydrolase | 0.51 | 38.0 | 3.30e-01 | 92.7% | 66.7% |
| 7jw6A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 42.0 | 2.91e-01 | 100.0% | 25.1% |
| 1gxsB02 | 3.40.50.11320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 42.0 | 3.62e-01 | 100.0% | 59.2% |
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.51 | 39.0 | 3.09e-01 | 89.1% | 43.8% |
| 1qssA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 35.0 | 2.64e-01 | 74.5% | 40.3% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 39.0 | 3.27e-01 | 92.7% | 45.9% |
| 1ac5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 44.0 | 2.59e-01 | 100.0% | 14.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289941 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.69 | 63.0 | 5.96e-01 | 100.0% | 92.3% |
| 3452308 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.64 | 55.0 | 3.96e-01 | 100.0% | 33.5% |
| 3282127 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.63 | 56.0 | 4.33e-01 | 100.0% | 47.5% |
| 3164515 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.62 | 54.0 | 3.71e-01 | 100.0% | 34.4% |
| 3694935 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 48.0 | 3.49e-01 | 100.0% | 30.0% |
| 4466130 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.59 | 52.0 | 3.61e-01 | 100.0% | 30.9% |
| 5005562 | 10.18.1.2 ↗ | beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like › DUF1254 | 0.57 | 43.0 | 3.19e-01 | 85.5% | 72.4% |
| 3602438 | 2006.1.3.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3226 | 0.57 | 47.0 | 3.63e-01 | 100.0% | 40.0% |
| 4608910 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 47.0 | 2.91e-01 | 100.0% | 14.4% |
| 3409951 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.56 | 38.0 | 2.88e-01 | 72.7% | 95.2% |
| 5012811 | 2006.1.3.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3226 | 0.56 | 48.0 | 3.55e-01 | 100.0% | 39.9% |
| 5058927 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.55 | 43.0 | 2.72e-01 | 92.7% | 32.8% |
| 4100115 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 45.0 | 3.33e-01 | 100.0% | 32.0% |
| 5735 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 48.0 | 4.44e-01 | 100.0% | 83.1% |
| 4188496 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.54 | 46.0 | 3.18e-01 | 100.0% | 27.9% |
| 4028967 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.54 | 44.0 | 2.79e-01 | 100.0% | 15.8% |
| 3445126 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.54 | 45.0 | 3.15e-01 | 100.0% | 37.6% |
| 4311607 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.54 | 45.0 | 3.47e-01 | 100.0% | 48.6% |
| 4034310 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.54 | 42.0 | 2.91e-01 | 89.1% | 27.3% |
| 3434713 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.54 | 44.0 | 3.49e-01 | 100.0% | 42.2% |
| 4478726 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.54 | 42.0 | 2.91e-01 | 92.7% | 92.2% |
| 3578004 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.54 | 45.0 | 2.94e-01 | 100.0% | 22.6% |
| 3574706 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 44.0 | 4.00e-01 | 100.0% | 73.8% |
| 4560221 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.95e-01 | 98.2% | 68.4% |
| 4541130 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.53 | 44.0 | 3.09e-01 | 100.0% | 27.9% |
| 3373416 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.53 | 43.0 | 2.88e-01 | 100.0% | 20.8% |
| 3665458 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.53 | 44.0 | 3.11e-01 | 100.0% | 34.7% |
| 3271707 | 11.1.1.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 | 0.53 | 42.0 | 3.07e-01 | 89.1% | 86.8% |
| 3360497 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.52 | 42.0 | 3.02e-01 | 100.0% | 32.0% |
| 3456683 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.52 | 43.0 | 3.02e-01 | 100.0% | 36.2% |
| 4821698 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.51 | 45.0 | 3.35e-01 | 100.0% | 38.4% |
| 3634326 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.51 | 45.0 | 3.05e-01 | 100.0% | 32.2% |
| 4373355 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.51 | 44.0 | 2.61e-01 | 100.0% | 14.2% |
| 4976802 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.12e-01 | 90.9% | 61.5% |
| 3297936 | 211.1.1.21 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › At5g48480-like_N | 0.51 | 43.0 | 3.96e-01 | 100.0% | 78.7% |
| 3357118 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.51 | 43.0 | 3.02e-01 | 100.0% | 31.0% |
| 1088871 | 213.4.1.1 ↗ | a+b three layers › Nat/Ivy › Immunity protein of a type VI secretion system effector › Immunity protein of a type VI secretion system effector › T6SS_Tgi2PP | 0.51 | 39.0 | 3.09e-01 | 89.1% | 43.8% |
| 3656569 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.50 | 41.0 | 2.91e-01 | 100.0% | 33.3% |
| 3501317 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 37.0 | 3.44e-01 | 87.3% | 71.2% |