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NC_028672.1__YP_009189087.1__ADU18_0229__00220

Bact-Vir

NC_028672.1__YP_009189087.1__ADU18_0229__00220

Identity

Accession:
NC_028672 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_PBES_02

TaxID: 1684115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.67 48.0 5.16e-01 100.0% 95.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.91e-01 100.0% 90.9%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.64 43.0 4.32e-01 72.9% 80.4%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.77e-01 95.8% 84.3%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 4.00e-01 83.3% 67.6%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.61 48.0 4.38e-01 95.8% 75.3%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 43.0 3.40e-01 100.0% 35.1%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 43.0 3.41e-01 100.0% 36.0%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.26e-01 100.0% 88.0%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 45.0 3.78e-01 95.8% 88.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.94e-01 100.0% 73.7%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 45.0 3.44e-01 95.8% 64.7%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 48.0 2.99e-01 100.0% 16.3%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.56 41.0 2.92e-01 81.2% 57.7%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.26e-01 75.0% 95.7%
1db3A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.56 40.0 3.20e-01 81.2% 69.0%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.89e-01 93.8% 52.5%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.56 40.0 3.24e-01 81.2% 64.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.56e-01 100.0% 100.0%
1xdiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.45e-01 95.8% 94.1%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.30e-01 100.0% 87.5%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.19e-01 95.8% 77.5%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.85e-01 100.0% 79.3%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.18e-01 95.8% 77.7%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 3.43e-01 97.9% 93.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.87e-01 91.7% 70.1%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 3.03e-01 95.8% 45.2%
3kkjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 3.12e-01 95.8% 77.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.22e-01 97.9% 85.5%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 3.01e-01 89.6% 46.5%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.84e-01 95.8% 82.4%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.14e-01 95.8% 85.2%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.52 41.0 3.20e-01 95.8% 55.5%
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 35.0 2.46e-01 70.8% 41.1%
2r9zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.35e-01 100.0% 94.1%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.99e-01 95.8% 76.5%
4iv9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.73e-01 95.8% 47.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.52 39.0 3.45e-01 87.5% 65.8%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.27e-01 89.6% 87.9%
2eaqA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 37.0 3.26e-01 85.4% 78.7%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.60e-01 85.4% 83.3%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.51e-01 95.8% 78.2%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.51 39.0 3.15e-01 87.5% 83.3%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.51 34.0 3.39e-01 70.8% 76.9%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.51 40.0 3.77e-01 95.8% 92.2%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.80e-01 95.8% 81.8%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 35.0 3.56e-01 91.7% 77.1%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.54e-01 91.7% 91.7%
7r71A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 39.0 3.65e-01 89.6% 78.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4308895 375.1.4.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.65 49.0 5.04e-01 93.8% 88.9%
3713588 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.21e-01 93.8% 69.5%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.02e-01 93.8% 95.6%
4409482 3158.1.1.2 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 0.63 43.0 3.77e-01 72.9% 48.0%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.61 50.0 4.84e-01 95.8% 100.0%
3981360 4.1.1.188 ↗ beta barrels › SH3 › SH3 › SH3 › Imm26 0.61 41.0 3.01e-01 75.0% 24.3%
5043979 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.33e-01 95.8% 87.1%
4076879 4.1.1.87 ↗ beta barrels › SH3 › SH3 › SH3 › FLgD_tudor 0.59 46.0 4.66e-01 95.8% 94.0%
4110878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.69e-01 91.7% 100.0%
3629877 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 46.0 3.04e-01 91.7% 62.2%
4099755 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.58 44.0 2.62e-01 91.7% 36.3%
4480519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.41e-01 100.0% 85.0%
3478678 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.18e-01 100.0% 90.7%
5752 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.56 41.0 2.94e-01 83.3% 57.7%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.82e-01 100.0% 73.3%
3695449 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 43.0 2.78e-01 95.8% 47.5%
3692391 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 43.0 2.63e-01 95.8% 38.1%
2499604 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.55 44.0 2.95e-01 93.8% 92.3%
4019781 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 41.0 2.70e-01 89.6% 27.3%
4451049 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 43.0 2.52e-01 95.8% 34.3%
3192693 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 42.0 2.71e-01 89.6% 50.0%
3213123 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 34.0 3.61e-01 79.2% 100.0%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 42.0 4.03e-01 97.9% 75.4%
5078989 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 42.0 3.11e-01 87.5% 77.8%
3468141 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 40.0 2.84e-01 87.5% 24.3%
3733620 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 42.0 2.75e-01 95.8% 56.1%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 43.0 4.09e-01 100.0% 74.6%
3279102 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 42.0 2.60e-01 95.8% 92.5%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.53 44.0 3.53e-01 100.0% 61.8%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.53 44.0 4.39e-01 100.0% 96.0%
3724813 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 42.0 2.73e-01 95.8% 69.1%
5022892 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.53 42.0 4.11e-01 93.8% 92.7%
4153553 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.06e-01 95.8% 91.1%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 41.0 3.39e-01 95.8% 77.1%
3894046 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 41.0 2.46e-01 95.8% 60.4%
4208229 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 41.0 4.09e-01 91.7% 96.0%
4485519 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.31e-01 93.8% 79.1%
3369784 809.1.1.5 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 0.53 37.0 3.27e-01 79.2% 56.6%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 42.0 3.95e-01 100.0% 72.3%
4133709 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 37.0 2.56e-01 100.0% 19.0%
4982561 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.52 41.0 4.18e-01 100.0% 100.0%
3220403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.40e-01 100.0% 74.3%
3505725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.02e-01 100.0% 94.5%
5011387 375.1.1.213 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.51 35.0 3.57e-01 100.0% 82.2%
4453816 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.50 41.0 2.65e-01 100.0% 19.0%