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NC_028672.1__YP_009189102.1__ADU18_0247__00235

Bact-Vir

NC_028672.1__YP_009189102.1__ADU18_0247__00235

Identity

Accession:
NC_028672 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-119
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 30.0 3.40e-01 82.0% 58.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 4.32e-01 87.6% 75.5%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 42.0 3.98e-01 82.0% 65.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 27.0 3.02e-01 80.9% 55.2%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 4.04e-01 82.0% 98.1%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.54 41.0 2.91e-01 83.1% 88.6%
1sr4C00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.41e-01 85.4% 68.8%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.52 36.0 2.89e-01 96.6% 36.8%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.47e-01 75.3% 80.8%
4gn1C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.11e-01 77.5% 68.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839435 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.64 40.0 4.25e-01 82.0% 73.3%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 30.0 2.87e-01 82.0% 41.0%
3269367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 30.0 2.98e-01 91.0% 44.2%
3611219 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 39.0 2.61e-01 75.3% 57.3%
3520218 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 29.0 2.67e-01 98.9% 35.8%
3662110 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 43.0 3.37e-01 98.9% 93.3%
3887044 4292.2.1.2 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.50 42.0 3.80e-01 96.6% 65.4%
4928567 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 42.0 3.02e-01 100.0% 86.9%