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NC_028673.1__YP_009189177.1__AU104_gp078__00040

Bact-Vir

NC_028673.1__YP_009189177.1__AU104_gp078__00040

Identity

Accession:
NC_028673 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Getseptimavirus› Gordonia_phage_GMA7

TaxID: 1647286

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: rep: KT206225.1__ALA48154.1__X__00041__D3-62
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pz4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 44.0 3.66e-01 92.6% 36.1%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 51.0 4.92e-01 100.0% 100.0%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 50.0 4.20e-01 100.0% 99.1%
3opyI00 3.40.50.11920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 2.80e-01 88.2% 74.6%
6ioyC02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 2.91e-01 79.4% 75.6%
4bx8B02 3.40.50.1910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 2 0.53 43.0 3.14e-01 98.5% 55.6%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.86e-01 98.5% 97.2%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.79e-01 100.0% 96.5%
2e5vA02 3.90.700.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.51 36.0 3.29e-01 75.0% 78.1%
2g5dA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.51 39.0 3.35e-01 92.6% 94.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018425 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.59 48.0 3.61e-01 94.1% 78.9%
1268540 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.56 50.0 4.17e-01 100.0% 95.8%
4255066 304.20.1.5 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.56 47.0 3.28e-01 94.1% 89.4%
3387467 7528.1.1.3 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III 0.56 39.0 3.37e-01 75.0% 100.0%
3613636 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.55 46.0 3.75e-01 97.1% 80.7%
5009620 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 44.0 3.79e-01 100.0% 100.0%
3635748 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.53 44.0 3.73e-01 97.1% 99.2%
3688649 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 44.0 4.48e-01 94.1% 98.5%
5001390 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.52 36.0 2.62e-01 73.5% 92.4%
3067140 3762.1.1.1 ↗ alpha arrays › Poly(ADP-ribose) glycohydrolase helical domain › Poly(ADP-ribose) glycohydrolase helical domain › Poly(ADP-ribose) glycohydrolase helical domain › PARG_cat_N 0.51 38.0 2.61e-01 79.4% 67.4%
3174082 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 42.0 3.53e-01 95.6% 100.0%