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NC_028673.1__YP_009189217.1__AU104_gp038__00080
Bact-VirNC_028673.1__YP_009189217.1__AU104_gp038__00080
Identity
- Accession:
- NC_028673 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
TaxID: 1647286
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-74
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.94 | 69.0 | 5.97e-01 | 76.5% | 56.2% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.90 | 67.0 | 5.81e-01 | 78.4% | 56.0% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.89 | 66.0 | 6.39e-01 | 78.4% | 70.2% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.82 | 71.0 | 6.05e-01 | 96.1% | 60.5% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.81 | 59.0 | 5.10e-01 | 78.4% | 55.1% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.80 | 58.0 | 4.64e-01 | 78.4% | 41.2% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.77 | 55.0 | 4.41e-01 | 84.3% | 38.2% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 62.0 | 4.05e-01 | 90.2% | 78.7% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.74 | 58.0 | 5.26e-01 | 100.0% | 63.8% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.72 | 64.0 | 5.65e-01 | 100.0% | 69.3% |
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.72 | 56.0 | 4.81e-01 | 84.3% | 81.0% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.72 | 58.0 | 5.40e-01 | 86.3% | 78.7% |
| 2be4A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.70 | 62.0 | 4.93e-01 | 100.0% | 52.5% |
| 2pziB03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 58.0 | 4.09e-01 | 92.2% | 30.7% |
| 1ckeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 57.0 | 3.70e-01 | 88.2% | 79.7% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.69 | 59.0 | 5.04e-01 | 98.0% | 60.5% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.69 | 56.0 | 4.75e-01 | 96.1% | 62.0% |
| 3ezxA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.67 | 51.0 | 4.27e-01 | 82.4% | 84.9% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.67 | 50.0 | 3.14e-01 | 84.3% | 53.1% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 56.0 | 4.89e-01 | 92.2% | 72.0% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.66 | 58.0 | 4.46e-01 | 92.2% | 55.4% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.66 | 55.0 | 4.32e-01 | 90.2% | 71.0% |
| 3qrxA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.65 | 59.0 | 5.33e-01 | 100.0% | 79.4% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 48.0 | 4.42e-01 | 88.2% | 62.1% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 51.0 | 4.44e-01 | 90.2% | 73.4% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.62 | 55.0 | 4.13e-01 | 94.1% | 49.1% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.62 | 50.0 | 4.46e-01 | 88.2% | 82.2% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 52.0 | 3.88e-01 | 100.0% | 79.3% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 52.0 | 4.68e-01 | 98.0% | 68.6% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 49.0 | 3.55e-01 | 100.0% | 44.9% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.60 | 49.0 | 3.92e-01 | 96.1% | 91.2% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 44.0 | 3.34e-01 | 86.3% | 47.4% |
| 7kb2B01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.58 | 48.0 | 3.23e-01 | 100.0% | 26.0% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.57 | 47.0 | 3.80e-01 | 100.0% | 77.7% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.57 | 49.0 | 3.88e-01 | 98.0% | 78.5% |
| 5z2mB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.57 | 50.0 | 3.67e-01 | 100.0% | 62.0% |
| 4jwoA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 47.0 | 3.50e-01 | 98.0% | 83.7% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.55 | 44.0 | 3.39e-01 | 100.0% | 80.3% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 45.0 | 3.61e-01 | 100.0% | 81.0% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 42.0 | 3.80e-01 | 88.2% | 92.5% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.51 | 44.0 | 3.62e-01 | 100.0% | 52.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 41.0 | 3.67e-01 | 100.0% | 64.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940365 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.88 | 77.0 | 4.54e-01 | 100.0% | 13.3% |
| 4560977 | 5046.1.1.1 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B | 0.86 | 59.0 | 4.01e-01 | 70.6% | 23.7% |
| 3944357 | 101.1.1.394 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 | 0.85 | 70.0 | 5.83e-01 | 90.2% | 56.5% |
| 3923146 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.84 | 74.0 | 4.25e-01 | 100.0% | 11.2% |
| 5035755 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.80 | 68.0 | 4.64e-01 | 92.2% | 60.6% |
| 3989754 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.79 | 69.0 | 6.15e-01 | 96.1% | 71.4% |
| 5036344 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.77 | 70.0 | 4.43e-01 | 100.0% | 26.4% |
| None | — | 0.77 | 62.0 | 4.04e-01 | 90.2% | 79.1% | |
| 3999776 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.77 | 66.0 | 4.86e-01 | 94.1% | 42.4% |
| 4411256 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.76 | 66.0 | 4.24e-01 | 96.1% | 74.8% |
| 3901620 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.74 | 59.0 | 5.22e-01 | 84.3% | 64.3% |
| 4943098 | 2004.1.1.1214 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RCF1-5-like_lid | 0.74 | 64.0 | 4.21e-01 | 96.1% | 94.1% |
| 4928083 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.73 | 60.0 | 3.80e-01 | 98.0% | 17.5% |
| 3762446 | 109.4.1.952 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_P4H | 0.72 | 58.0 | 4.19e-01 | 86.3% | 35.4% |
| 3695318 | 109.4.1.173 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatA_aux_su | 0.71 | 65.0 | 3.61e-01 | 100.0% | 69.4% |
| 3886268 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.71 | 61.0 | 4.73e-01 | 96.1% | 47.3% |
| 3196401 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 55.0 | 5.37e-01 | 96.1% | 78.2% |
| 3686904 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.70 | 51.0 | 3.47e-01 | 80.4% | 22.1% |
| 3590551 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.69 | 50.0 | 5.08e-01 | 92.2% | 80.0% |
| 4944988 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.69 | 60.0 | 3.84e-01 | 98.0% | 25.0% |
| 3367929 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.69 | 59.0 | 3.65e-01 | 92.2% | 17.7% |
| 1088836 | 101.38.1.0 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep | 0.69 | 56.0 | 4.36e-01 | 96.1% | 46.7% |
| 4979742 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 54.0 | 4.64e-01 | 96.1% | 55.0% |
| 5072566 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.68 | 55.0 | 5.09e-01 | 94.1% | 85.7% |
| 3503474 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.68 | 59.0 | 3.81e-01 | 100.0% | 24.8% |
| 3595738 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.68 | 61.0 | 4.38e-01 | 100.0% | 90.7% |
| 3170015 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.66 | 56.0 | 3.51e-01 | 100.0% | 24.3% |
| 3621846 | 109.4.1.238 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP_TPR_like | 0.64 | 59.0 | 4.12e-01 | 100.0% | 97.9% |
| 4981494 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.61 | 58.0 | 4.33e-01 | 100.0% | 46.4% |
| 4936312 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.58 | 49.0 | 3.86e-01 | 98.0% | 77.3% |
| 4408604 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.54 | 40.0 | 2.66e-01 | 84.3% | 58.8% |
| 3695367 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 47.0 | 3.12e-01 | 100.0% | 62.9% |