←Back to structures

NC_028675.1__YP_009189359.1__AU158_gp20__00020

Bact-Vir

NC_028675.1__YP_009189359.1__AU158_gp20__00020

Identity

Accession:
NC_028675 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Friunavirus› Acinetobacter_phage_phiAB1

TaxID: 691318

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 194-218_391-492
PDB
Domain cluster: rep: OP291336.1__UYD72377.1__AIIMSE5_030__00030__D106-210
D2 medium residues 1-74
PDB
D3 medium residues 75-150
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 35.0 2.97e-01 71.1% 92.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964115 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.73 51.0 4.22e-01 100.0% 42.3%
3250585 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.62 43.0 2.55e-01 72.4% 21.7%
4979986 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.58 41.0 2.93e-01 75.0% 76.3%
4983903 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.54 41.0 3.44e-01 82.9% 88.9%
3429256 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 39.0 2.49e-01 77.6% 60.3%
5065329 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.53 45.0 3.05e-01 100.0% 87.4%
4251053 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 46.0 3.22e-01 100.0% 80.8%
5035769 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.51 40.0 2.64e-01 85.5% 89.3%
D4 medium residues 232-306
PDB
Domain cluster: rep: OQ632216.1__WGL32605.1__Arash_gp154c__00154__D249-319
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.72 54.0 4.32e-01 100.0% 41.7%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 40.0 4.55e-01 84.0% 76.4%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.70 43.0 4.26e-01 77.3% 59.7%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 48.0 5.15e-01 72.0% 87.1%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.67 45.0 2.96e-01 70.7% 16.6%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.66 51.0 4.29e-01 82.7% 57.1%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.66 46.0 4.22e-01 74.7% 64.4%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.60 43.0 3.53e-01 77.3% 41.8%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.58 41.0 3.80e-01 77.3% 83.8%
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.57 48.0 3.44e-01 97.3% 60.7%
3memA02 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 49.0 3.26e-01 100.0% 64.8%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 43.0 3.39e-01 84.0% 75.3%
2i10B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.59e-01 81.3% 95.2%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.55 40.0 3.76e-01 78.7% 85.6%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 40.0 3.48e-01 77.3% 86.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.54 38.0 3.80e-01 89.3% 71.1%
3h37A03 1.20.58.1960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 3.90e-01 97.3% 89.8%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.54 39.0 3.38e-01 78.7% 73.6%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.53 41.0 3.71e-01 84.0% 68.0%
4q69B00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 43.0 2.66e-01 92.0% 42.6%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 39.0 3.89e-01 90.7% 75.3%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.50 39.0 4.07e-01 82.7% 92.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704770 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.89 81.0 6.55e-01 100.0% 55.4%
3703169 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.89 80.0 6.08e-01 100.0% 45.0%
3601930 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.86 78.0 5.68e-01 100.0% 39.5%
3718521 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.84 74.0 5.97e-01 100.0% 52.6%
3969341 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.82 63.0 5.25e-01 100.0% 48.8%
4169333 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.81 62.0 5.21e-01 100.0% 48.8%
4217329 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.80 58.0 4.96e-01 100.0% 48.3%
3711347 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.78 57.0 4.66e-01 100.0% 42.1%
4456463 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.77 59.0 4.93e-01 100.0% 47.7%
4024558 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.77 57.0 4.63e-01 100.0% 42.1%
4028002 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 44.0 4.98e-01 81.3% 85.5%
3173152 103.1.1.7 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_2 0.70 47.0 5.23e-01 81.3% 94.5%
3376425 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.64 44.0 4.32e-01 73.3% 89.4%
5034899 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.63 53.0 3.87e-01 94.7% 47.0%
5018477 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 45.0 4.69e-01 84.0% 81.4%
4989005 5053.1.1.1 ↗ alpha complex topology › Clc chloride channel › Clc chloride channel › Clc chloride channel › Voltage_CLC 0.62 44.0 2.72e-01 74.7% 22.9%
3714091 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 44.0 4.42e-01 85.3% 74.7%
5062242 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.61 43.0 3.30e-01 74.7% 43.4%
4970998 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.60 50.0 4.55e-01 98.7% 67.0%
5022438 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.60 45.0 3.69e-01 82.7% 54.7%
5004327 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 39.0 3.47e-01 72.0% 50.4%
5012500 3843.1.1.6 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.55 40.0 3.86e-01 80.0% 67.1%
4933045 601.7.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 0.54 43.0 4.18e-01 86.7% 88.2%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.67e-01 92.0% 35.4%
3599328 616.1.1.6 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Mpo1-like 0.53 35.0 3.33e-01 74.7% 56.7%
5052967 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 2.84e-01 90.7% 30.8%
4034213 632.2.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.52 39.0 3.82e-01 84.0% 75.0%
D5 medium residues 307-384
PDB
Domain cluster: rep: OP291336.1__UYD72377.1__AIIMSE5_030__00030__D44-101