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NC_028680.1__YP_009189943.1__SEA_PEPE_72__00072
Bact-VirNC_028680.1__YP_009189943.1__SEA_PEPE_72__00072
Identity
- Accession:
- NC_028680 ↗
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Taxonomy
TaxID: 1735466
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 101-142
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 56.0 | 5.08e-01 | 81.0% | 73.2% |
| 7tvyA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.72 | 55.0 | 4.06e-01 | 85.7% | 39.7% |
| 2mxdA00 | 1.10.260.110 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.71 | 42.0 | 3.68e-01 | 97.6% | 37.1% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.66 | 57.0 | 4.55e-01 | 100.0% | 54.7% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.66 | 54.0 | 4.18e-01 | 95.2% | 41.5% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 45.0 | 3.91e-01 | 81.0% | 44.4% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.65 | 56.0 | 4.32e-01 | 100.0% | 45.4% |
| 3ijdA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.61 | 47.0 | 2.84e-01 | 83.3% | 40.9% |
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 52.0 | 4.20e-01 | 100.0% | 64.2% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 3.44e-01 | 97.6% | 87.7% |
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.57 | 49.0 | 3.62e-01 | 97.6% | 42.5% |
| 5ow2A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 47.0 | 4.07e-01 | 100.0% | 75.3% |
| 2jmsA01 | 1.20.50.40 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.56 | 38.0 | 3.74e-01 | 81.0% | 61.7% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.59e-01 | 95.2% | 58.8% |
| 2i6xA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 40.0 | 3.51e-01 | 95.2% | 74.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4092770 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 60.0 | 4.55e-01 | 95.2% | 35.0% |
| 4955891 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.64 | 51.0 | 4.35e-01 | 95.2% | 53.3% |
| 4960980 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.25e-01 | 92.9% | 55.4% |
| 4931659 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 47.0 | 3.81e-01 | 90.5% | 41.2% |
| 5005289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 50.0 | 4.14e-01 | 92.9% | 50.0% |
| 3943306 | 101.28.1.0 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins | 0.63 | 50.0 | 5.13e-01 | 92.9% | 92.5% |
| 5034272 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 52.0 | 4.12e-01 | 92.9% | 45.9% |
| 4331694 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 4.35e-01 | 95.2% | 61.7% |
| 4950221 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.62 | 48.0 | 3.68e-01 | 92.9% | 35.2% |
| 3239585 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.62 | 51.0 | 4.35e-01 | 95.2% | 55.7% |
| 5027410 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.59 | 43.0 | 3.51e-01 | 95.2% | 37.9% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.58 | 47.0 | 4.12e-01 | 97.6% | 60.0% |
| 5047085 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.52e-01 | 92.9% | 50.0% |
D2
high
residues 147-200
D3
medium
residues 2-92