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NC_028683.1__YP_009190290.1__AU156_gp132__00132

Bact-Vir

NC_028683.1__YP_009190290.1__AU156_gp132__00132

Identity

Accession:
NC_028683 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Edwardsiella_phage_PEi20

TaxID: 1608310

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-63
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 61.0 5.39e-01 100.0% 84.6%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 5.39e-01 100.0% 86.3%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 4.39e-01 100.0% 63.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 57.0 4.89e-01 100.0% 89.8%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 53.0 4.96e-01 87.5% 66.7%
4dnaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 50.0 3.15e-01 96.9% 59.6%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 49.0 4.87e-01 100.0% 94.3%
1qf8A02 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 46.0 3.73e-01 90.6% 56.9%
4q5eA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 43.0 3.20e-01 84.4% 61.3%
3it5G00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.59 43.0 2.80e-01 87.5% 21.1%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 43.0 4.29e-01 90.6% 84.8%
3vsvA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 2.95e-01 81.2% 89.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.79e-01 100.0% 63.6%
2nn6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 2.88e-01 90.6% 49.6%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 40.0 2.67e-01 81.2% 17.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.33e-01 96.9% 72.7%
2idaA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 39.0 3.06e-01 93.8% 59.1%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 2.84e-01 100.0% 24.3%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 36.0 3.09e-01 87.5% 59.7%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.52 40.0 3.23e-01 90.6% 43.1%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 37.0 3.77e-01 100.0% 97.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 2.83e-01 100.0% 40.2%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 37.0 3.30e-01 100.0% 71.4%
3kz5E00 6.10.140.1550 Special › Helix non-globular › Helix Hairpins › 0.51 36.0 3.33e-01 87.5% 56.2%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 2.71e-01 93.8% 88.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.78 62.0 5.30e-01 100.0% 81.7%
3415332 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 53.0 4.96e-01 71.9% 70.0%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 59.0 4.94e-01 100.0% 72.3%
4217737 374.1.1.5 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › 4HPAD_g_N 0.74 56.0 5.25e-01 90.6% 67.5%
3792293 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.72 55.0 4.16e-01 87.5% 57.6%
4954496 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.68 52.0 3.96e-01 84.4% 40.0%
3259235 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 48.0 4.89e-01 84.4% 100.0%
1510479 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 52.0 3.52e-01 96.9% 89.0%
3262367 2.1.1.103 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PHA02142 0.64 48.0 3.12e-01 75.0% 19.3%
3232865 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 3.40e-01 100.0% 24.4%
5025694 2.1.1.287 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.60 47.0 3.14e-01 100.0% 20.6%
5073213 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.60 45.0 2.81e-01 93.8% 15.9%
3497561 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 46.0 2.66e-01 90.6% 37.2%
3936596 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 44.0 3.44e-01 93.8% 46.7%
3623874 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.59 46.0 3.22e-01 100.0% 24.4%
3535861 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.59 42.0 3.43e-01 84.4% 56.0%
3685207 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.59 45.0 3.13e-01 100.0% 22.9%
4943069 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 41.0 2.94e-01 90.6% 23.6%
4976822 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.58 47.0 3.32e-01 96.9% 28.8%
4028093 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 3.38e-01 100.0% 26.4%
5044642 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.57 39.0 2.49e-01 90.6% 12.9%
4249162 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.57 44.0 2.96e-01 84.4% 38.7%
5011984 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 3.29e-01 100.0% 28.3%
3366361 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 3.89e-01 90.6% 90.0%
4956196 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.54 40.0 3.43e-01 93.8% 100.0%
4975267 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.80e-01 87.5% 75.0%
3790969 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.53 39.0 3.83e-01 100.0% 97.5%
4211249 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 38.0 3.32e-01 93.8% 70.8%
4454089 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.52 37.0 2.58e-01 90.6% 81.8%
3528012 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.51 40.0 2.45e-01 87.5% 64.9%
3830376 109.4.1.394 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMC1_C 0.51 35.0 2.14e-01 84.4% 16.0%
4930635 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.51 37.0 3.65e-01 96.9% 82.5%