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NC_028683.1__YP_009190402.1__AU156_gp207__00244
Bact-VirNC_028683.1__YP_009190402.1__AU156_gp207__00244
Identity
- Accession:
- NC_028683 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Kanagawavirus›
Edwardsiella_phage_PEi20
TaxID: 1608310
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-57
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.72 | 38.0 | 2.60e-01 | 90.7% | 15.6% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 34.0 | 2.90e-01 | 87.0% | 30.2% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 34.0 | 2.69e-01 | 96.3% | 28.3% |
| 2znhA03 | 6.20.40.10 | Special › Other non-globular › Porin MspA ribbon fold › | 0.61 | 39.0 | 4.07e-01 | 74.1% | 72.3% |
| 4ivkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 46.0 | 2.81e-01 | 94.4% | 25.0% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 46.0 | 2.74e-01 | 100.0% | 28.6% |
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 42.0 | 3.16e-01 | 87.0% | 60.0% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 47.0 | 2.94e-01 | 100.0% | 52.8% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 33.0 | 2.82e-01 | 92.6% | 34.3% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3680994 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.71 | 48.0 | 2.90e-01 | 70.4% | 40.5% |
| 3661519 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.69 | 47.0 | 2.75e-01 | 70.4% | 32.5% |
| 3680991 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.68 | 46.0 | 2.81e-01 | 70.4% | 42.2% |
| 3466671 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.68 | 46.0 | 2.82e-01 | 70.4% | 45.0% |
| 3451138 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.65 | 46.0 | 2.81e-01 | 75.9% | 38.5% |
| 3442448 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.64 | 45.0 | 2.56e-01 | 74.1% | 25.5% |
| 3817779 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.63 | 44.0 | 2.70e-01 | 74.1% | 34.9% |
| 409322 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.61 | 34.0 | 2.66e-01 | 96.3% | 28.0% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.59 | 48.0 | 2.81e-01 | 98.1% | 27.6% |
| 3804360 | 109.4.1.1331 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif | 0.59 | 46.0 | 2.87e-01 | 83.3% | 39.7% |
| 3317430 | 109.4.1.1610 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, E_motif | 0.58 | 41.0 | 2.52e-01 | 74.1% | 34.2% |
| 3831231 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.58 | 48.0 | 2.70e-01 | 88.9% | 26.2% |
| 3465965 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.57 | 44.0 | 2.60e-01 | 83.3% | 28.0% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.56 | 48.0 | 2.79e-01 | 100.0% | 36.8% |
| 3810267 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.55 | 46.0 | 2.88e-01 | 90.7% | 43.1% |
| 3803664 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.55 | 45.0 | 2.82e-01 | 90.7% | 42.3% |
| 3628236 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 44.0 | 2.70e-01 | 100.0% | 42.0% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.53 | 46.0 | 2.61e-01 | 100.0% | 34.1% |
| 3335598 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.53 | 44.0 | 2.73e-01 | 100.0% | 55.3% |
| 3294919 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 42.0 | 2.65e-01 | 100.0% | 45.1% |
| 4984125 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.51 | 40.0 | 3.07e-01 | 100.0% | 69.7% |