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NC_028696.2__YP_009191471.1__SEN22_18__00018
Bact-VirNC_028696.2__YP_009191471.1__SEN22_18__00018
Identity
- Accession:
- NC_028696 ↗
- Kingdom:
- phage
Quality
78.1
mean pLDDT
Taxonomy
TaxID: 1647458
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-79
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03869.21 best | Arc | 23.2 | 6.70e-05 | 60.3% | 70.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.63e-01 | 71.4% | 65.9% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.82e-01 | 81.0% | 71.3% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.44e-01 | 71.4% | 80.0% |
| 4h15A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 37.0 | 2.52e-01 | 71.4% | 57.9% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.50 | 37.0 | 2.73e-01 | 81.0% | 81.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726114 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.77 | 54.0 | 5.08e-01 | 73.0% | 62.7% |
| 3955892 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.76 | 50.0 | 5.51e-01 | 87.3% | 84.0% |
| 2455631 | 101.1.11.11 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 | 0.67 | 49.0 | 4.46e-01 | 90.5% | 59.0% |
| 3253480 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.59 | 43.0 | 3.08e-01 | 76.2% | 49.2% |
| 3688820 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.58 | 41.0 | 2.64e-01 | 76.2% | 24.4% |