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NC_028743.1__YP_009193570.1__AU484_gp19__00019

Bact-Vir

NC_028743.1__YP_009193570.1__AU484_gp19__00019

Identity

Accession:
NC_028743 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mannheimia_phage_vB_MhS_587AP2

TaxID: 1572745

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-130
PDB
Domain cluster: rep: MT135025.1__QIW90629.1__GCAPEGMB_00282__00282__D24-113
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 36.0 3.72e-01 97.9% 51.7%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 51.0 4.00e-01 85.1% 89.0%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.62 56.0 5.30e-01 98.9% 97.3%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 36.0 3.75e-01 77.7% 61.8%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 34.0 4.30e-01 73.4% 98.1%
3dshA01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 46.0 3.63e-01 84.0% 86.1%
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 35.0 3.35e-01 73.4% 47.8%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 4.31e-01 100.0% 84.6%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.58 37.0 3.64e-01 71.3% 58.8%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.57 45.0 3.79e-01 86.2% 87.0%
4p4mA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 39.0 3.68e-01 72.3% 95.7%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.56 41.0 3.43e-01 78.7% 54.4%
3oguA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 39.0 3.58e-01 73.4% 91.1%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 38.0 3.27e-01 72.3% 67.1%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.96e-01 78.7% 93.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 44.0 4.15e-01 100.0% 76.6%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.53 39.0 3.81e-01 98.9% 70.5%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.53 36.0 3.36e-01 70.2% 60.2%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 4.11e-01 100.0% 81.2%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.96e-01 100.0% 73.6%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 31.0 3.51e-01 94.7% 85.1%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.94e-01 100.0% 72.7%
1qg3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.63e-01 78.7% 87.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3418861 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.77 45.0 4.55e-01 76.6% 57.9%
3465761 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.74 44.0 3.95e-01 78.7% 43.1%
5031911 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.68 46.0 3.28e-01 100.0% 23.6%
2142307 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.67 53.0 4.18e-01 84.0% 82.5%
3906179 4099.1.1.9 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 0.65 37.0 3.11e-01 81.9% 32.9%
1145731 708.1.1.5 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › AFT 0.65 40.0 3.72e-01 70.2% 47.9%
3433086 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.64 40.0 4.06e-01 70.2% 63.2%
4947183 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.62 39.0 2.83e-01 89.4% 22.1%
5021393 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.62 39.0 2.81e-01 89.4% 21.9%
3586304 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 45.0 4.02e-01 75.5% 73.1%
3677415 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.61 39.0 3.61e-01 72.3% 49.2%
3833068 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 43.0 4.24e-01 80.9% 72.0%
1162211 9.25.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein BACOVA_03322 C-terminal domain › Uncharacterized protein BACOVA_03322 C-terminal domain › BT_3044-like_C 0.58 46.0 3.85e-01 86.2% 86.5%
5044385 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.58 42.0 3.25e-01 76.6% 95.2%
3230359 207.1.1.66 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF3557 0.56 40.0 2.88e-01 76.6% 24.1%
4384965 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 37.0 3.93e-01 77.7% 80.0%
2605239 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 48.0 4.48e-01 98.9% 81.7%
3589357 3425.2.1.3 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.55 40.0 3.04e-01 77.7% 34.2%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.55 28.0 3.43e-01 83.0% 86.0%
151074 316.1.1.24 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm 0.54 38.0 3.07e-01 73.4% 56.6%
5051686 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 37.0 3.39e-01 72.3% 86.6%
4277768 223.2.1.52 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › GAP1-N2 0.54 42.0 3.61e-01 83.0% 71.0%
3282232 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 36.0 3.19e-01 70.2% 83.3%
3509095 3425.2.1.3 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.53 40.0 2.75e-01 78.7% 23.3%
3941935 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 44.0 4.11e-01 100.0% 73.9%
3449012 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 4.21e-01 92.6% 80.9%
4300924 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 43.0 4.03e-01 100.0% 73.0%
2006900 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.52 43.0 4.23e-01 100.0% 82.7%
4662505 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.52 36.0 3.75e-01 86.2% 80.0%
4331814 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 42.0 3.93e-01 100.0% 73.0%
3187813 220.1.1.204 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 0.51 40.0 3.76e-01 85.1% 73.9%
4819450 110.1.1.5 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CENP-N 0.51 35.0 3.15e-01 71.3% 71.9%
3513019 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.51 38.0 2.93e-01 80.9% 71.0%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 45.0 3.87e-01 100.0% 74.0%
4265395 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 42.0 3.99e-01 100.0% 75.7%
3940735 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 40.0 2.67e-01 84.0% 98.3%