←Back to structures

NC_028746.1__YP_009193872.1__HARRISON_59__00059

Bact-Vir

NC_028746.1__YP_009193872.1__HARRISON_59__00059

Identity

Accession:
NC_028746 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Harrisonvirus› Paenibacillus_phage_Harrison

TaxID: 1636257

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: rep: EU408779.1__ACB54902.1__X__00003__D7-73
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 43.0 2.86e-01 77.6% 44.1%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 32.0 3.14e-01 71.8% 52.8%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 44.0 3.06e-01 87.1% 63.9%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 42.0 3.29e-01 78.8% 63.7%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.56 42.0 2.86e-01 78.8% 40.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 35.0 3.03e-01 72.9% 43.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 38.0 3.42e-01 75.3% 50.8%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 3.21e-01 88.2% 71.9%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 43.0 3.05e-01 83.5% 78.0%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.73e-01 85.9% 57.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.23e-01 75.3% 81.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719326 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 46.0 2.96e-01 70.6% 46.4%
4991507 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 45.0 3.10e-01 75.3% 47.0%
3928054 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 46.0 3.29e-01 82.4% 55.8%
3265225 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 47.0 3.17e-01 84.7% 27.2%
3659696 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 43.0 3.18e-01 75.3% 69.9%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.59 54.0 4.82e-01 97.6% 87.8%
3743943 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 52.0 3.34e-01 100.0% 25.2%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.99e-01 88.2% 60.5%
3484308 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 47.0 2.98e-01 90.6% 64.3%
4528718 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 39.0 3.01e-01 71.8% 78.5%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.56 39.0 4.26e-01 74.1% 91.4%
3706423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.04e-01 94.1% 43.3%
3783252 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 39.0 2.56e-01 74.1% 50.4%
3612415 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 38.0 2.56e-01 75.3% 64.0%
3613171 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 3.01e-01 75.3% 77.4%
3254426 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 37.0 3.30e-01 77.6% 75.6%
None — 0.52 44.0 2.64e-01 100.0% 76.8%
3775078 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 40.0 2.49e-01 87.1% 45.6%