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NC_028746.1__YP_009193891.1__HARRISON_78__00078

Bact-Vir

NC_028746.1__YP_009193891.1__HARRISON_78__00078

Identity

Accession:
NC_028746 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Harrisonvirus› Paenibacillus_phage_Harrison

TaxID: 1636257

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-43_63-88
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.74 57.0 4.67e-01 83.6% 99.1%
1kf6C00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.70 58.0 4.54e-01 91.8% 56.9%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 49.0 4.60e-01 77.0% 79.5%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 53.0 4.00e-01 86.9% 78.5%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 4.76e-01 80.3% 79.7%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 44.0 3.96e-01 73.8% 50.6%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 50.0 3.86e-01 93.4% 36.9%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 3.88e-01 83.6% 58.6%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 51.0 5.05e-01 88.5% 87.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 45.0 4.20e-01 73.8% 59.2%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.64 43.0 3.04e-01 85.2% 23.3%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.64 43.0 4.79e-01 75.4% 97.7%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 51.0 4.17e-01 93.4% 63.7%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 49.0 4.57e-01 88.5% 68.8%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 49.0 4.92e-01 86.9% 84.4%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 53.0 4.03e-01 98.4% 48.1%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.62 52.0 5.16e-01 96.7% 96.9%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 47.0 4.60e-01 82.0% 73.1%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 50.0 4.92e-01 86.9% 89.1%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 48.0 5.11e-01 95.1% 100.0%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.61 52.0 4.50e-01 98.4% 71.4%
3uj9A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 49.0 3.31e-01 91.8% 46.9%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.61 44.0 3.56e-01 86.9% 38.7%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.61 51.0 4.93e-01 98.4% 95.8%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 51.0 4.90e-01 98.4% 98.6%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.60 45.0 4.09e-01 80.3% 100.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.58 48.0 4.11e-01 95.1% 62.3%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 49.0 4.73e-01 100.0% 98.6%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 48.0 3.98e-01 95.1% 87.6%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.57 47.0 4.35e-01 93.4% 74.1%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 48.0 4.44e-01 98.4% 77.8%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.57 50.0 4.41e-01 100.0% 80.2%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 44.0 4.24e-01 95.1% 75.3%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.56 45.0 3.60e-01 90.2% 52.3%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.54 41.0 4.04e-01 83.6% 76.5%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.53 45.0 4.36e-01 90.2% 100.0%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 42.0 2.79e-01 88.5% 21.4%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 4.21e-01 93.4% 83.3%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.51 44.0 3.96e-01 98.4% 93.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940087 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.70 53.0 4.84e-01 82.0% 68.8%
4386662 3291.1.1.158 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N 0.69 50.0 4.09e-01 77.0% 65.2%
3520009 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 52.0 4.73e-01 80.3% 65.0%
3262218 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.65 50.0 3.89e-01 86.9% 46.9%
5029994 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.65 51.0 5.07e-01 88.5% 87.7%
4867087 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.62 53.0 4.82e-01 96.7% 75.9%
3535521 1073.1.1.11 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › WWC1 0.60 49.0 4.69e-01 95.1% 94.7%
3738041 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.59 49.0 4.49e-01 96.7% 71.8%
3965106 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.59 45.0 4.17e-01 86.9% 65.3%
3487203 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 45.0 4.10e-01 88.5% 67.1%
223985 3600.1.1.1 ↗ alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD 0.57 48.0 3.61e-01 91.8% 64.4%
3336677 605.1.1.132 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 0.57 49.0 4.56e-01 93.4% 89.3%
D2 medium residues 89-142
PDB
Domain cluster: rep: KX227758.1__ANT40227.1__X__00020__D76-127
CATH (68)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 77.0 7.22e-01 94.4% 76.6%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.91 77.0 5.71e-01 94.4% 39.2%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 77.0 7.22e-01 96.3% 76.9%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 70.0 6.80e-01 90.7% 76.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 71.0 6.12e-01 96.3% 57.5%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 70.0 6.73e-01 88.9% 75.4%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 69.0 6.21e-01 98.1% 63.9%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 63.0 6.28e-01 94.4% 78.6%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 65.0 6.05e-01 98.1% 68.7%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 72.0 6.27e-01 98.1% 68.8%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 68.0 6.84e-01 96.3% 90.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 70.0 5.58e-01 96.3% 49.5%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 6.04e-01 88.9% 73.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 72.0 6.81e-01 98.1% 84.1%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 67.0 5.70e-01 94.4% 57.5%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 64.0 6.11e-01 87.0% 77.4%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 6.57e-01 92.6% 93.1%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 66.0 4.94e-01 92.6% 43.1%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 6.19e-01 90.7% 81.0%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 6.26e-01 90.7% 92.0%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 6.07e-01 90.7% 100.0%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 4.79e-01 92.6% 43.9%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 6.11e-01 92.6% 85.7%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.71e-01 90.7% 75.4%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 6.25e-01 96.3% 89.1%
2e7xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 6.27e-01 96.3% 94.2%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.37e-01 88.9% 67.2%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 6.23e-01 96.3% 96.0%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.15e-01 96.3% 90.7%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 4.60e-01 92.6% 50.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 4.65e-01 92.6% 47.3%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.53e-01 85.2% 75.0%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 4.53e-01 92.6% 48.5%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 63.0 5.09e-01 96.3% 62.1%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.51e-01 92.6% 84.9%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.47e-01 92.6% 88.9%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.20e-01 85.2% 71.2%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 61.0 5.21e-01 100.0% 86.2%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 4.42e-01 92.6% 43.3%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.13e-01 92.6% 68.2%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.00e-01 92.6% 74.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 4.33e-01 92.6% 48.2%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.14e-01 96.3% 69.3%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.38e-01 90.7% 74.2%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.74e-01 87.0% 61.2%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.23e-01 90.7% 84.5%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.10e-01 92.6% 82.9%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 55.0 4.20e-01 96.3% 52.7%
3f0cA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 49.0 5.11e-01 77.8% 98.0%
3nnrA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 58.0 3.96e-01 98.1% 55.9%
3dpjF00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 56.0 3.95e-01 98.1% 65.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.63e-01 90.7% 64.5%
2fd5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 44.0 4.68e-01 70.4% 89.6%
3anpB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 53.0 3.76e-01 100.0% 60.3%
3ni7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 54.0 3.79e-01 94.4% 67.2%
2i10A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 51.0 5.01e-01 92.6% 90.0%
3s5rB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 50.0 3.58e-01 98.1% 58.7%
6pe0E01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 39.0 3.93e-01 72.2% 64.2%
2rekA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 50.0 3.58e-01 92.6% 58.1%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 49.0 3.53e-01 98.1% 56.8%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 48.0 3.69e-01 87.0% 45.3%
3hugD00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.58 44.0 4.29e-01 88.9% 74.2%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 46.0 3.33e-01 94.4% 63.4%
2jhnA03 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.57 42.0 4.11e-01 81.5% 76.7%
4hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 3.36e-01 96.3% 65.3%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.56 40.0 3.85e-01 79.6% 68.3%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.53 46.0 3.64e-01 96.3% 56.0%
4kh7B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 46.0 3.52e-01 98.1% 73.7%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964397 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.92 78.0 6.09e-01 94.4% 46.7%
1568706 101.1.1.95 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like 0.92 76.0 7.36e-01 92.6% 80.0%
3955987 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.91 77.0 6.23e-01 94.4% 51.6%
4244028 101.1.1.107 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.90 78.0 7.51e-01 96.3% 83.3%
3587471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 77.0 5.81e-01 98.1% 41.5%
3959252 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 76.0 7.35e-01 96.3% 83.3%
3281471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 76.0 6.57e-01 96.3% 62.5%
3279596 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.89 74.0 4.94e-01 94.4% 25.8%
3578154 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 79.0 6.53e-01 96.3% 57.8%
4349614 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.88 72.0 7.20e-01 96.3% 87.3%
3363617 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.88 77.0 6.55e-01 96.3% 65.9%
3959868 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 73.0 6.48e-01 94.4% 65.3%
3944370 101.1.1.318 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF30335 0.88 71.0 6.44e-01 94.4% 67.1%
3284011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 76.0 6.93e-01 98.1% 72.9%
4683276 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 71.0 5.82e-01 94.4% 51.6%
3163613 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 74.0 6.73e-01 94.4% 74.3%
3943462 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 72.0 7.24e-01 98.1% 92.7%
4563894 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.84 72.0 6.15e-01 94.4% 77.6%
3964463 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 71.0 5.60e-01 94.4% 47.3%
4112812 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 72.0 5.76e-01 96.3% 49.5%
3972282 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 70.0 6.19e-01 94.4% 64.6%
5045332 101.1.2.294 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF742 0.82 62.0 5.99e-01 87.0% 73.3%
4563221 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 68.0 5.68e-01 94.4% 53.7%
4977403 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 61.0 5.92e-01 90.7% 73.3%
4356198 101.1.3.16 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r4 0.81 74.0 6.74e-01 100.0% 82.9%
3989015 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 68.0 5.40e-01 92.6% 72.4%
4458444 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 66.0 5.46e-01 98.1% 51.6%
4174590 101.1.2.61 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.80 67.0 6.30e-01 96.3% 75.4%
4358999 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.80 69.0 5.87e-01 94.4% 78.8%
4213931 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 67.0 5.81e-01 94.4% 60.0%
4986358 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.80 63.0 5.98e-01 88.9% 72.3%
4309654 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.80 59.0 5.92e-01 83.3% 78.2%
4570076 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.80 67.0 4.23e-01 94.4% 18.2%
4585396 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 67.0 4.79e-01 94.4% 31.9%
4984666 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.79 64.0 5.74e-01 96.3% 64.0%
4975730 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 66.0 6.01e-01 96.3% 70.0%
4097443 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 66.0 4.67e-01 94.4% 30.0%
3727217 101.1.2.384 ↗ alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.79 64.0 6.64e-01 88.9% 98.0%
4102958 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 65.0 6.15e-01 96.3% 75.4%
4980944 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 62.0 5.45e-01 92.6% 58.7%
5032069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 5.60e-01 98.1% 57.9%
4948012 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 61.0 4.81e-01 87.0% 41.7%
5022523 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.78 66.0 5.42e-01 92.6% 69.5%
4933352 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.78 64.0 6.41e-01 96.3% 89.1%
4674817 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 67.0 4.73e-01 100.0% 37.1%
5030780 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 61.0 6.28e-01 88.9% 92.0%
5077990 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.78 61.0 5.18e-01 87.0% 52.2%
3289818 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.77 65.0 4.85e-01 92.6% 51.5%
5052142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.81e-01 88.9% 88.9%
3954536 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 4.56e-01 87.0% 37.5%
4985252 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 62.0 5.83e-01 96.3% 73.8%
4976098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 5.69e-01 88.9% 68.6%
5056141 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 62.0 6.17e-01 96.3% 87.3%
3650286 101.1.2.454 ↗ alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.76 56.0 5.82e-01 88.9% 86.0%
3959624 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 60.0 6.17e-01 90.7% 92.0%
3204144 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.76 65.0 4.96e-01 98.1% 50.0%
5073990 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.76 64.0 5.79e-01 96.3% 78.7%
3512795 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.76 63.0 4.45e-01 92.6% 44.4%
1291586 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.75 62.0 4.60e-01 92.6% 48.2%
5054938 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.75 62.0 4.82e-01 92.6% 58.0%
4982117 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.59e-01 92.6% 78.7%
4971365 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 57.0 5.73e-01 90.7% 83.6%
4927482 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 60.0 6.24e-01 96.3% 98.0%
5082754 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 57.0 5.60e-01 92.6% 78.3%
3956363 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.74 61.0 5.50e-01 92.6% 81.3%
5027877 101.1.2.82 ↗ alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.74 61.0 5.38e-01 92.6% 85.0%
2630 101.1.2.102 ↗ alpha arrays › HTH › HTH › winged helix domain › SelB-wing_1 0.74 57.0 5.49e-01 85.2% 73.8%
3693312 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.86e-01 92.6% 85.0%
3753093 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.73 58.0 5.45e-01 88.9% 70.8%
3955994 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 60.0 5.21e-01 92.6% 90.6%
3397049 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.73 63.0 4.99e-01 96.3% 55.0%
4947595 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.31e-01 92.6% 65.3%
5033230 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 60.0 6.04e-01 96.3% 92.7%
5013090 304.4.1.83 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 0.72 60.0 4.17e-01 96.3% 28.3%
3568862 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.72 56.0 5.28e-01 90.7% 70.8%
4950221 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.71 57.0 4.65e-01 92.6% 64.8%
3942639 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.71 61.0 5.16e-01 96.3% 70.0%
3986350 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 53.0 5.47e-01 88.9% 90.0%
3981659 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.70 60.0 5.09e-01 96.3% 66.7%
5047331 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.63e-01 92.6% 52.2%
4996857 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.39e-01 90.7% 86.4%
3295746 101.1.2.454 ↗ alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.68 54.0 4.92e-01 90.7% 72.0%
3218285 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 52.0 4.45e-01 90.7% 54.7%