←Back to structures
NC_028748.2__YP_009194002.1__BMBtpLA_24__00024
Bact-VirNC_028748.2__YP_009194002.1__BMBtpLA_24__00024
Identity
- Accession:
- NC_028748 ↗
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Taxonomy
TaxID: 1445809
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-84
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.52 | 41.0 | 3.71e-01 | 86.7% | 100.0% |
| 4lm6A00 | 3.90.510.10 | Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain | 0.51 | 31.0 | 3.47e-01 | 83.1% | 80.6% |
| 1r4sA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.51 | 43.0 | 2.98e-01 | 94.0% | 28.9% |
| 2pk0A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 44.0 | 3.13e-01 | 95.2% | 56.3% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 43.0 | 3.80e-01 | 94.0% | 66.1% |
| 4dlqA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.50 | 36.0 | 2.80e-01 | 77.1% | 48.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3476563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.71 | 52.0 | 4.55e-01 | 97.6% | 52.5% |
| 3738992 | 220.1.1.9 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs | 0.60 | 50.0 | 3.99e-01 | 96.4% | 45.5% |
| 4296145 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 45.0 | 4.15e-01 | 84.3% | 100.0% |
| 3258434 | 5.1.4.266 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st | 0.58 | 48.0 | 2.84e-01 | 92.8% | 15.5% |
| 4291138 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.57 | 44.0 | 3.91e-01 | 84.3% | 92.8% |
| 4129894 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.56 | 43.0 | 3.93e-01 | 83.1% | 99.1% |
| 4292698 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 44.0 | 3.98e-01 | 86.7% | 100.0% |
| 4522938 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 43.0 | 3.76e-01 | 81.9% | 98.3% |
| 4613951 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.54 | 42.0 | 3.72e-01 | 85.5% | 99.2% |
| 1933323 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 34.0 | 2.21e-01 | 100.0% | 14.8% |
| 4405368 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.53 | 42.0 | 3.76e-01 | 86.7% | 95.8% |
| 3833178 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 42.0 | 4.30e-01 | 95.2% | 87.5% |
| 3600173 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 47.0 | 3.58e-01 | 100.0% | 69.5% |
| 4504658 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 42.0 | 3.78e-01 | 86.7% | 98.3% |
| 1954213 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.51 | 43.0 | 3.62e-01 | 94.0% | 58.6% |
| 4043299 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.50 | 39.0 | 3.59e-01 | 85.5% | 100.0% |
| 3971872 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.50 | 43.0 | 3.80e-01 | 95.2% | 65.9% |