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NC_028755.1__YP_009194977.1__CPT_Margaery162__00162

Bact-Vir

NC_028755.1__YP_009194977.1__CPT_Margaery162__00162

Identity

Accession:
NC_028755 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pseudotevenvirus› Citrobacter_phage_Margaery

TaxID: 1701810

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-54
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.70 59.0 4.68e-01 100.0% 93.6%
3vkwA01 3.30.450.420 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 47.0 3.42e-01 100.0% 26.7%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 54.0 3.87e-01 100.0% 86.6%
1bqbA01 3.10.170.10 Alpha Beta › Roll › Elastase; domain 1 › 0.64 50.0 3.56e-01 86.0% 40.9%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 52.0 3.94e-01 100.0% 87.2%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.15e-01 100.0% 77.4%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.31e-01 100.0% 78.6%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.25e-01 100.0% 78.6%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.06e-01 100.0% 81.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 3.92e-01 100.0% 62.9%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.14e-01 100.0% 82.0%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.90e-01 100.0% 66.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 46.0 4.74e-01 100.0% 93.8%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 3.98e-01 100.0% 75.9%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.60 47.0 4.02e-01 100.0% 51.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.88e-01 100.0% 71.6%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.94e-01 100.0% 76.6%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.59 49.0 3.62e-01 100.0% 34.8%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 51.0 3.92e-01 100.0% 52.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.59 44.0 4.49e-01 100.0% 86.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.15e-01 100.0% 63.0%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.58 44.0 3.62e-01 86.0% 66.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.57 41.0 3.54e-01 100.0% 45.1%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 45.0 4.04e-01 98.0% 93.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.54e-01 90.0% 95.1%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.77e-01 100.0% 71.6%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 47.0 3.19e-01 100.0% 96.4%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 38.0 3.79e-01 78.0% 100.0%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 44.0 3.39e-01 98.0% 91.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 38.0 3.72e-01 100.0% 66.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.74e-01 100.0% 57.6%
2x5jQ01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 36.0 2.57e-01 72.0% 43.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.63e-01 100.0% 54.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.96e-01 100.0% 78.4%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.53e-01 100.0% 83.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.31e-01 100.0% 40.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.81e-01 100.0% 66.3%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.42e-01 98.0% 53.8%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 40.0 2.78e-01 98.0% 22.4%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.82e-01 100.0% 85.5%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.22e-01 88.0% 45.3%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.15e-01 100.0% 39.4%
4a37A01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 2.94e-01 92.0% 36.3%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 41.0 3.38e-01 100.0% 60.6%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3923434 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 57.0 4.18e-01 100.0% 66.7%
3506170 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 57.0 4.05e-01 100.0% 62.9%
3758839 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 57.0 4.08e-01 100.0% 65.0%
3743031 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 56.0 4.17e-01 100.0% 77.0%
3778135 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.65 54.0 4.01e-01 100.0% 55.3%
3523477 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.65 54.0 3.77e-01 100.0% 44.9%
3552888 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.22e-01 100.0% 71.7%
3874175 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.17e-01 100.0% 68.8%
3254541 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.28e-01 100.0% 76.4%
3478666 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 54.0 4.33e-01 100.0% 77.1%
3595300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.42e-01 100.0% 86.3%
3594546 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 52.0 4.27e-01 100.0% 75.2%
3891023 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 3.70e-01 100.0% 45.6%
3265348 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 4.34e-01 100.0% 78.9%
3841924 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 53.0 4.21e-01 100.0% 75.5%
3204773 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 52.0 4.09e-01 100.0% 68.3%
4036705 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 46.0 3.47e-01 84.0% 45.2%
5007103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.57e-01 100.0% 78.8%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 46.0 3.39e-01 84.0% 42.1%
3266727 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 50.0 4.05e-01 100.0% 73.0%
3905525 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 3.97e-01 100.0% 65.0%
3596153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 4.11e-01 100.0% 70.4%
3260650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 50.0 4.08e-01 100.0% 72.7%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.61 50.0 3.92e-01 100.0% 62.9%
3992986 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.61 51.0 4.56e-01 100.0% 97.3%
5021724 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 4.45e-01 100.0% 80.0%
3249359 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 49.0 3.86e-01 100.0% 64.8%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 49.0 4.17e-01 100.0% 86.3%
3966647 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.60 45.0 3.81e-01 88.0% 60.0%
3700740 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.09e-01 100.0% 72.0%
3266485 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.75e-01 100.0% 54.3%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.12e-01 100.0% 74.7%
3220929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.35e-01 98.0% 73.3%
3934628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.00e-01 100.0% 52.2%
4971330 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 49.0 3.89e-01 100.0% 51.8%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.69e-01 100.0% 100.0%
3520059 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 44.0 3.50e-01 92.0% 60.8%
169848 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.56 45.0 3.86e-01 98.0% 78.5%
4246480 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.56 47.0 3.93e-01 100.0% 88.4%
3164898 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 46.0 3.84e-01 100.0% 51.6%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 43.0 3.67e-01 100.0% 50.0%
3447802 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 45.0 3.82e-01 98.0% 53.3%
3887822 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.46e-01 96.0% 57.6%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 2.99e-01 100.0% 24.0%
4205165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 3.86e-01 100.0% 58.8%
3877348 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.54 41.0 3.14e-01 98.0% 32.6%
4360808 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 39.0 3.28e-01 100.0% 40.8%
3952469 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.53 42.0 3.33e-01 98.0% 60.0%
3523462 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.53 43.0 3.24e-01 100.0% 94.7%
5011877 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.53 46.0 3.83e-01 100.0% 88.9%
4133464 2487.1.1.5 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain 0.53 44.0 3.23e-01 98.0% 91.7%
4331428 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.53 45.0 3.36e-01 100.0% 35.7%
3480666 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 3.23e-01 100.0% 62.2%
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.52 43.0 3.83e-01 100.0% 81.0%
3793075 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 38.0 2.99e-01 88.0% 57.0%
1868507 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.51 40.0 3.06e-01 100.0% 33.6%
4119693 6064.1.1.0 ↗ few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 0.51 41.0 4.17e-01 100.0% 100.0%
5026013 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.10e-01 96.0% 37.5%