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NC_028762.1__YP_009195656.1__AVT59_gp137__00238

Bact-Vir

NC_028762.1__YP_009195656.1__AVT59_gp137__00238

Identity

Accession:
NC_028762 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Bragavirus› Proteus_phage_vB_PmiM_Pm5461

TaxID: 1636250

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-176
PDB
Domain cluster: rep: NC_018087.3__YP_006489032.1__ZZ1p0245__00245__D24-178
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF15711.11 best ILEI 35.4 1.70e-08 57.6% 82.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 25.0 3.44e-01 70.9% 61.7%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 27.0 3.61e-01 71.5% 66.7%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 27.0 3.49e-01 74.8% 75.6%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 51.0 4.22e-01 100.0% 90.4%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 28.0 3.41e-01 96.0% 73.3%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 50.0 4.30e-01 100.0% 96.1%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 46.0 3.60e-01 100.0% 94.4%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 37.0 4.12e-01 75.5% 94.3%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 3.86e-01 98.0% 74.5%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.51 40.0 4.09e-01 97.4% 87.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1877732 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.82 77.0 7.69e-01 99.3% 96.8%
3248682 3570.1.1.0 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.81 76.0 7.62e-01 98.0% 100.0%
3797738 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.81 73.0 7.19e-01 100.0% 91.1%
3889825 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.81 75.0 7.23e-01 99.3% 92.9%
2844702 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.79 74.0 7.01e-01 99.3% 90.3%
3221958 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.78 70.0 7.02e-01 100.0% 93.5%
3221959 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.78 73.0 6.98e-01 100.0% 91.2%
3530806 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.77 70.0 6.84e-01 99.3% 90.6%
4993981 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.64 24.0 3.34e-01 71.5% 66.3%
5057039 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 24.0 3.38e-01 72.8% 74.4%
4586447 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 51.0 4.10e-01 100.0% 89.0%
3193428 246.2.1.3 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C 0.57 51.0 3.85e-01 100.0% 89.3%
3287634 2003.1.3.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_3 0.54 47.0 3.20e-01 92.7% 87.4%
3955969 246.2.1.19 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap 0.54 47.0 3.63e-01 100.0% 82.9%
4052313 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.53 35.0 4.04e-01 92.1% 95.2%
4262608 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 36.0 4.12e-01 92.7% 98.2%
3060582 5.1.4.58 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 0.51 45.0 3.53e-01 98.0% 95.0%
3628460 3308.1.1.0 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.51 28.0 3.73e-01 75.5% 100.0%
4951890 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.50 36.0 3.98e-01 97.4% 95.7%
3956011 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.50 44.0 3.17e-01 96.7% 91.4%
3441510 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 3.37e-01 86.1% 88.5%
4972026 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 30.0 3.83e-01 74.8% 96.8%
3721060 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 3.30e-01 91.4% 98.5%
4472063 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.50 33.0 3.81e-01 91.4% 91.8%
D2 high residues 187-318
PDB
Domain cluster: rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00157__D2-120