←Back to structures

NC_028764.1__YP_009195819.1__PHICD505_20057__00059

Bact-Vir

NC_028764.1__YP_009195819.1__PHICD505_20057__00059

Identity

Accession:
NC_028764 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Colneyvirus› Clostridium_phage_phiCD505

TaxID: 1582154

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: rep: PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00241__D2-67
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 50.0 5.00e-01 71.8% 75.0%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 49.0 4.23e-01 74.4% 51.6%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 48.0 4.43e-01 75.6% 71.8%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 48.0 4.00e-01 75.6% 48.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 46.0 3.85e-01 73.1% 48.5%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.89e-01 70.5% 62.0%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.63 45.0 3.82e-01 74.4% 50.0%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.97e-01 76.9% 68.1%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 35.0 3.67e-01 71.8% 59.5%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.62 44.0 3.73e-01 75.6% 55.4%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.75e-01 71.8% 85.3%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 41.0 3.57e-01 75.6% 53.7%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 41.0 3.28e-01 75.6% 46.9%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 2.69e-01 79.5% 41.9%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.56 30.0 3.53e-01 93.6% 73.7%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.56 38.0 4.18e-01 100.0% 87.5%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 38.0 3.00e-01 71.8% 100.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 38.0 4.27e-01 88.5% 98.3%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 4.15e-01 96.2% 89.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 33.0 3.54e-01 83.3% 73.9%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 41.0 3.80e-01 97.4% 81.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3414272 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.80 57.0 5.31e-01 74.4% 73.7%
3939076 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.78 62.0 5.67e-01 84.6% 77.0%
3926363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 56.0 4.91e-01 79.5% 66.1%
3507234 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.74 60.0 5.34e-01 87.2% 75.5%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.74 60.0 5.33e-01 87.2% 74.5%
3602759 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 51.0 5.71e-01 73.1% 98.3%
3498575 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.73 60.0 5.54e-01 89.7% 75.0%
3982048 327.16.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › type_II_gspD_N0 0.72 28.0 3.49e-01 73.1% 56.0%
3233686 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 49.0 4.03e-01 78.2% 49.0%
3513280 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.66 55.0 5.08e-01 91.0% 75.0%
4992470 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.63 41.0 4.52e-01 74.4% 86.7%
2162577 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.63 46.0 3.83e-01 76.9% 53.7%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 35.0 3.98e-01 100.0% 76.4%
5048954 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.43e-01 96.2% 47.8%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.55 34.0 3.60e-01 98.7% 68.6%
5044987 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 4.08e-01 96.2% 68.6%
4353391 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 2.62e-01 89.7% 85.9%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.51 38.0 3.70e-01 80.8% 77.8%
3937789 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 37.0 2.94e-01 76.9% 75.8%
5046509 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.73e-01 93.6% 78.7%
4947165 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 2.80e-01 93.6% 34.1%
3923802 101.1.2.278 ↗ alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.51 37.0 3.47e-01 96.2% 63.2%
4933315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 3.55e-01 94.9% 71.2%
4965091 101.1.2.908 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5787 0.50 35.0 3.49e-01 97.4% 71.2%
3742496 2006.1.6.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 0.50 35.0 2.60e-01 74.4% 48.5%
5036782 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.77e-01 96.2% 84.1%