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NC_028767.1__YP_009196141.1__VEGAS_42__00042

Bact-Vir

NC_028767.1__YP_009196141.1__VEGAS_42__00042

Identity

Accession:
NC_028767 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vegasvirus› Paenibacillus_phage_Vegas

TaxID: 1636261

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-31
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i9fB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 63.0 3.95e-01 100.0% 18.3%
1y9wA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.73 57.0 4.12e-01 100.0% 29.8%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.73 59.0 4.25e-01 100.0% 76.0%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.71 56.0 3.94e-01 100.0% 26.5%
2ip2A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 56.0 3.36e-01 96.8% 12.6%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 55.0 3.58e-01 100.0% 23.0%
2vugA05 3.30.70.3360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 55.0 5.01e-01 100.0% 68.8%
1u6mA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 52.0 3.32e-01 100.0% 16.4%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.68 53.0 3.13e-01 100.0% 10.8%
4n0rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 50.0 2.95e-01 100.0% 9.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.29e-01 96.8% 51.4%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 56.0 4.53e-01 100.0% 52.2%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.67 51.0 3.67e-01 100.0% 76.1%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 49.0 3.59e-01 100.0% 77.1%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 47.0 3.92e-01 100.0% 40.0%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 3.65e-01 96.8% 30.2%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 47.0 3.27e-01 90.3% 56.3%
1hh2P03 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.64 48.0 3.89e-01 100.0% 40.5%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.64 49.0 3.40e-01 100.0% 25.4%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.61 50.0 3.00e-01 100.0% 31.0%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 3.34e-01 93.5% 31.1%
3au0A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 2.83e-01 83.9% 24.2%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.60 46.0 3.99e-01 93.5% 61.4%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 49.0 3.87e-01 100.0% 56.6%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.12e-01 90.3% 44.8%
2bueA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 42.0 2.80e-01 100.0% 18.4%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 41.0 3.17e-01 93.5% 71.4%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.11e-01 96.8% 86.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 2.71e-01 100.0% 21.0%
1fjrA01 2.30.160.11 Mainly Beta › Roll › Methuselah Ectodomain; Chain: A, domain 1 › 0.52 39.0 3.34e-01 93.5% 61.9%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.66e-01 96.8% 29.9%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 39.0 3.18e-01 93.5% 33.3%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.38e-01 96.8% 52.6%
4wovA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 2.90e-01 93.5% 33.3%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.50 39.0 3.85e-01 80.6% 71.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 33.0 2.65e-01 100.0% 85.2%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062023 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 67.0 4.58e-01 96.8% 27.0%
4417272 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.77 55.0 3.64e-01 87.1% 18.5%
5007755 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.76 58.0 3.92e-01 93.5% 22.8%
4944753 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 61.0 4.58e-01 96.8% 36.5%
3486431 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.75 54.0 3.09e-01 80.6% 9.2%
4929803 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 59.0 3.73e-01 96.8% 18.5%
5045752 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 58.0 3.67e-01 96.8% 17.4%
3758327 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.75 55.0 3.22e-01 87.1% 23.1%
3240679 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 58.0 3.65e-01 80.6% 19.4%
4999546 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 56.0 4.20e-01 100.0% 35.8%
4927944 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 4.06e-01 96.8% 34.0%
3286277 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 56.0 3.62e-01 100.0% 18.9%
4972754 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.72 54.0 3.44e-01 96.8% 16.3%
3737633 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 59.0 5.08e-01 93.5% 82.0%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 58.0 4.07e-01 93.5% 28.6%
3279209 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 53.0 3.45e-01 96.8% 17.7%
4927073 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.71 55.0 3.52e-01 96.8% 17.7%
3286725 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 54.0 3.45e-01 96.8% 18.4%
3281879 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 55.0 3.54e-01 96.8% 18.3%
4978855 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 51.0 3.68e-01 96.8% 30.0%
4011618 2.1.1.194 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.70 57.0 4.08e-01 96.8% 53.1%
3280466 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 52.0 3.34e-01 100.0% 17.4%
5002856 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 50.0 3.60e-01 96.8% 25.8%
4525886 109.4.1.1360 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.69 49.0 2.70e-01 100.0% 4.5%
3838355 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.69 56.0 3.74e-01 100.0% 38.5%
4030386 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.69 51.0 2.83e-01 80.6% 5.7%
3691249 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 52.0 3.59e-01 96.8% 24.6%
4950811 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.67 48.0 3.82e-01 96.8% 34.4%
3802579 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.66 52.0 4.15e-01 100.0% 77.3%
4965008 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.66 47.0 3.56e-01 96.8% 29.5%
5071707 304.19.1.4 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › DUF2110_N 0.66 53.0 4.13e-01 96.8% 41.3%
4957330 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.65 47.0 3.25e-01 96.8% 22.1%
3168368 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.65 51.0 3.56e-01 96.8% 68.7%
3993144 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.65 51.0 3.34e-01 100.0% 79.4%
3264034 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.65 49.0 4.15e-01 100.0% 64.6%
4931494 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 45.0 3.55e-01 96.8% 32.6%
4930172 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 47.0 3.49e-01 100.0% 28.7%
3313182 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.64 48.0 4.02e-01 100.0% 58.6%
4956874 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.64 46.0 3.65e-01 100.0% 38.9%
3711526 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.63 45.0 2.64e-01 93.5% 8.1%
5013170 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.60 44.0 3.49e-01 100.0% 37.8%
1884678 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 42.0 3.50e-01 96.8% 46.2%
4965642 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.60 41.0 2.89e-01 100.0% 20.6%
3433041 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 47.0 2.76e-01 96.8% 42.0%
3970632 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 44.0 3.55e-01 96.8% 37.5%
3363114 325.1.7.25 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PORR 0.58 43.0 3.36e-01 100.0% 36.7%
3273083 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 38.0 2.89e-01 80.6% 98.9%
3610083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.02e-01 100.0% 35.0%
3738542 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 39.0 2.24e-01 77.4% 9.4%
3396057 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.51 38.0 3.03e-01 90.3% 85.0%
3884353 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.51 39.0 2.75e-01 90.3% 46.1%
3522226 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.50 34.0 2.70e-01 96.8% 28.0%