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NC_028767.1__YP_009196180.1__VEGAS_81__00081

Bact-Vir

NC_028767.1__YP_009196180.1__VEGAS_81__00081

Identity

Accession:
NC_028767 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vegasvirus› Paenibacillus_phage_Vegas

TaxID: 1636261

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: rep: NC_041866.1__YP_009593404.1__FDG83_gp75__00075__D3-57
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07927.18 best HicA_toxin 38.1 1.90e-09 75.7% 91.4%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.84 67.0 6.82e-01 85.7% 88.4%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.83 65.0 7.03e-01 88.6% 100.0%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.73 55.0 5.67e-01 80.0% 86.4%
3zi1A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.71 53.0 4.29e-01 78.6% 81.4%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 43.0 4.23e-01 75.7% 58.7%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 39.0 4.00e-01 71.4% 58.0%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 39.0 2.76e-01 80.0% 17.4%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 51.0 4.28e-01 81.4% 89.2%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 46.0 3.85e-01 70.0% 50.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.67 49.0 4.34e-01 78.6% 84.8%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.67 50.0 4.08e-01 80.0% 62.3%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 42.0 2.68e-01 70.0% 13.0%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 47.0 4.33e-01 74.3% 57.8%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 49.0 4.94e-01 82.9% 84.7%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 46.0 3.54e-01 75.7% 43.1%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 45.0 3.50e-01 75.7% 43.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 47.0 4.13e-01 81.4% 80.7%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 40.0 3.22e-01 75.7% 31.9%
4z04A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 47.0 3.91e-01 81.4% 87.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 36.0 3.76e-01 80.0% 60.6%
1uu1B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 46.0 3.77e-01 80.0% 58.0%
4lqbA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 52.0 4.25e-01 95.7% 97.7%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.02e-01 84.3% 96.4%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 44.0 4.03e-01 80.0% 94.6%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 2.99e-01 84.3% 68.1%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 42.0 3.34e-01 80.0% 56.0%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.45e-01 87.1% 78.1%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 2.98e-01 81.4% 74.6%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 3.26e-01 84.3% 93.6%
3b0xA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 42.0 3.80e-01 82.9% 77.1%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 3.65e-01 74.3% 93.3%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.55 39.0 3.89e-01 95.7% 72.0%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.31e-01 74.3% 72.7%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 3.11e-01 81.4% 77.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.74e-01 80.0% 82.6%
4i99A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 2.97e-01 98.6% 35.1%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 40.0 3.95e-01 92.9% 77.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.46e-01 80.0% 80.4%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 34.0 3.42e-01 90.0% 64.4%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.66e-01 72.9% 74.3%
6qkgA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 3.43e-01 82.9% 74.8%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.28e-01 82.9% 87.5%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257938 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.92 70.0 7.50e-01 78.6% 98.3%
4966352 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.90 80.0 7.82e-01 94.3% 90.7%
5002984 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.90 72.0 7.29e-01 84.3% 87.1%
5027607 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.87 71.0 6.95e-01 87.1% 86.7%
5002760 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.85 67.0 6.72e-01 82.9% 85.7%
5055849 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.85 68.0 7.02e-01 84.3% 90.8%
5075316 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.85 64.0 6.49e-01 80.0% 87.1%
5829 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.84 67.0 6.79e-01 85.7% 88.6%
4947543 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.83 71.0 6.97e-01 91.4% 86.5%
2410067 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.81 66.0 6.98e-01 90.0% 100.0%
3281454 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.78 47.0 2.85e-01 80.0% 10.4%
3734499 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.74 65.0 5.75e-01 100.0% 91.3%
3951184 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.72 44.0 2.64e-01 80.0% 9.1%
3955471 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.72 43.0 2.61e-01 80.0% 9.0%
4313104 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.68 50.0 4.40e-01 78.6% 79.8%
3965099 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.67 49.0 4.31e-01 78.6% 79.0%
4515677 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.66 47.0 4.07e-01 77.1% 73.7%
4951171 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.65 53.0 5.31e-01 91.4% 87.1%
4929392 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 50.0 4.56e-01 81.4% 68.9%
4325664 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.64 47.0 4.95e-01 95.7% 93.3%
4981525 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 48.0 4.67e-01 84.3% 81.0%
4479376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.62 47.0 4.00e-01 81.4% 73.0%
3839435 330.9.1.0 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.62 42.0 4.17e-01 75.7% 66.7%
3282162 211.1.1.11 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 0.61 47.0 3.94e-01 84.3% 95.2%
3286565 2003.1.11.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › AdoHcyase 0.60 47.0 2.83e-01 84.3% 47.8%
3713696 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.60 42.0 2.65e-01 74.3% 93.8%
5060347 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.59 48.0 2.91e-01 90.0% 28.6%
3727719 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.59 44.0 2.53e-01 80.0% 12.4%
3270679 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.58 44.0 2.59e-01 80.0% 22.7%
5008972 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.58 46.0 2.82e-01 90.0% 28.4%
4279317 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 46.0 2.82e-01 90.0% 28.4%
3250567 331.18.1.4 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.57 44.0 3.34e-01 84.3% 46.9%
4874139 186.1.1.27 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › ResT-TelK_cat 0.57 39.0 3.50e-01 80.0% 51.5%
4573193 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.57 46.0 2.99e-01 90.0% 42.4%
4944335 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 44.0 4.07e-01 88.6% 90.3%
4614224 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.54 35.0 4.02e-01 81.4% 92.0%
5075428 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 38.0 3.51e-01 75.7% 81.1%
4032952 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 42.0 3.04e-01 88.6% 82.2%
3891197 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.54 42.0 3.00e-01 91.4% 92.9%
3722737 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 2.64e-01 90.0% 28.5%
5081103 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 38.0 3.19e-01 75.7% 54.4%
4156758 4354.1.1.1 ↗ a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.53 44.0 3.78e-01 100.0% 70.0%
4353586 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 3.46e-01 77.1% 63.0%
3402362 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 36.0 3.09e-01 74.3% 51.5%
4269264 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.52 33.0 3.95e-01 87.1% 100.0%
3256547 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.54e-01 82.9% 78.0%
3229763 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 43.0 3.04e-01 95.7% 95.4%
4165766 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.51 35.0 3.80e-01 88.6% 85.0%
4113537 2.1.1.327 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27401 0.51 41.0 4.31e-01 88.6% 95.4%
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.51 38.0 3.33e-01 81.4% 75.5%
2482315 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.50 35.0 3.87e-01 88.6% 96.2%