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NC_028768.1__YP_009196226.1__AVV28_gp41__00041
Bact-VirNC_028768.1__YP_009196226.1__AVV28_gp41__00041
Identity
- Accession:
- NC_028768 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Taxonomy
TaxID: 1589746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-56
D2
medium
residues 57-156
Domain cluster:
rep: MT375529.1__QLF88480.1__Kolga_gp34__00034__D1-133
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01503.23 best | PRA-PH | 43.2 | 6.10e-11 | 65.0% | 67.4% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3etuA01 | 1.10.287.3290 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 42.0 | 5.17e-01 | 95.0% | 80.0% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.79 | 75.0 | 6.54e-01 | 100.0% | 75.5% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.79 | 57.0 | 5.89e-01 | 84.0% | 80.4% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.72 | 59.0 | 5.70e-01 | 88.0% | 82.3% |
| 4jhrB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 47.0 | 3.46e-01 | 81.0% | 86.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942636 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.93 | 41.0 | 6.43e-01 | 99.0% | 100.0% |
| 4945676 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.85 | 58.0 | 6.09e-01 | 89.0% | 76.7% |
| 4162803 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.84 | 60.0 | 5.88e-01 | 75.0% | 69.5% |
| 3410968 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.82 | 46.0 | 5.48e-01 | 97.0% | 80.0% |
| 3280093 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.71 | 57.0 | 4.78e-01 | 83.0% | 76.8% |
| 4138272 | 109.4.1.146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load | 0.60 | 47.0 | 3.03e-01 | 80.0% | 27.5% |
| 3233749 | 109.4.1.1550 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFCD_C, ARM_TBCD, ARM_TBCD_2nd | 0.58 | 45.0 | 2.62e-01 | 83.0% | 29.0% |